View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_high_2 (Length: 663)
Name: NF15531_high_2
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 16 - 640
Target Start/End: Original strand, 15618065 - 15618685
Alignment:
| Q |
16 |
atccttgaatgtatttaaattttnnnnnnntatccttgaatgtgttgtctatggtgaattgaattcttaaatgcgttttt-gttagttagtttagtcatc |
114 |
Q |
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| T |
15618065 |
atccttgaatgtatttaaattttaaaaaaatatccttgaatgtgttgtccatggtgaattgaattcttaaatgcgttttttgttagttagtttagtcatc |
15618164 |
T |
|
| Q |
115 |
aaatgcctattctgttaatcaatttagtttataaattccatataaaaagaaaacttaaggnnnnnnnnngtggttgtaatttcaatatattcaaagattt |
214 |
Q |
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| T |
15618165 |
aaatgcctcttccgttaatcaatttagtccgtgaattccatataaaaagaaaacttaagtttttttttttttgttgtaatttcaatatattcaaagattt |
15618264 |
T |
|
| Q |
215 |
aagtgacattgtcttacacgtctaaagaccaaaaggatgatttgctaatttttatatcattaaacaaaaccattaattaattgtttctgtttttctcttt |
314 |
Q |
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| T |
15618265 |
aagtgacattgtcttacacgtctaaagaccaaaaggatgatttactaatttttatatcattaaacaaaaccattaattaattgtttctgtttttctcttt |
15618364 |
T |
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| Q |
315 |
ttggtgttaaaccaagcgaactggataacatgccaatctagtaaa-gcatagataatgaacaatgaacatctaaactaaagtttaaaaaaggacatcatt |
413 |
Q |
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| T |
15618365 |
ttggtgttaaaccaagcgaactggataacatgccaatctagtaaaagcatagataatgaacaatgaacatctaaactaaagtttaaaaaaggacatcatt |
15618464 |
T |
|
| Q |
414 |
tgcacccttaagcgagatctctatttttctattcaaggtgataactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattct |
513 |
Q |
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| T |
15618465 |
tgcacccttaagcgagatctctatttttctattcaaggtgacaactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattct |
15618564 |
T |
|
| Q |
514 |
ttcttatttgctattctttttgtatatgtcttaccatttaatttgtagcctaggttctgcctacctcacgacacggaggaacgattcttgatgcgcaact |
613 |
Q |
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| T |
15618565 |
ttcttattagctattctttt-gtatatgccttaccattt-----ggagcctaggttctgcctacctcacgacacggaggaacgattcttgacgcgcaact |
15618658 |
T |
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| Q |
614 |
cgaagaatggtagggtgtccaaccact |
640 |
Q |
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| T |
15618659 |
cgaagaatggtagggtgtccaaccact |
15618685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 356 - 520
Target Start/End: Original strand, 8527642 - 8527807
Alignment:
| Q |
356 |
taaagcatagataatgaacaatgaacatctaaactaaagttta--aaaaaggacatcatttgcacccttaagcgagatctctatttttctattcaaggtg |
453 |
Q |
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||||||| ||||||||| |||||||||||| | |||| |||| ||||| ||||||||||||| | | || ||||| | || |||| | ||||| | |
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| T |
8527642 |
taaagcacagataatgattaatgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagatttgtagtttttt-ttcaaaatc |
8527740 |
T |
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| Q |
454 |
ataactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttcttat |
520 |
Q |
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| T |
8527741 |
acaactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttat |
8527807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 1601314 - 1601250
Alignment:
| Q |
456 |
aactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattctttcttat |
520 |
Q |
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| T |
1601314 |
aactagccaaatcataacttgtgatttaacataaccctgcctagtgtatggaaattccttcttat |
1601250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 19153397 - 19153463
Alignment:
| Q |
216 |
agtgacattgtcttacacgtctaaagaccaaaaggatgatttgctaatttttatatcattaaacaaa |
282 |
Q |
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| T |
19153397 |
agtgacattgtcttacacatttgaagaccaaaatgaagatttactcatttttatatccttaaacaaa |
19153463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 1601410 - 1601348
Alignment:
| Q |
359 |
agcatagataatgaacaatgaacatctaaactaaagtttaaaaaaggacatcatttgcaccct |
421 |
Q |
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| T |
1601410 |
agcatagataatgattagtgaacatctagattaaagtttacaaaaagacatcatttgcatcct |
1601348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 48362951 - 48362895
Alignment:
| Q |
456 |
aactagccaaatgataacttgtgatttaacataaccctgtctagtgtatgtaaattc |
512 |
Q |
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| T |
48362951 |
aactagccaaatcataacttgtgatttaacataaccctgcccagtgtatggaaattc |
48362895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 32732702 - 32732752
Alignment:
| Q |
92 |
ttttgttagttagtttagtcatcaaatgcctattctgttaatcaatttagt |
142 |
Q |
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| T |
32732702 |
ttttgttagttagtttagtcctcaaatgtgttttctgtcaatcaatttagt |
32732752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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