View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15531_high_24 (Length: 224)

Name: NF15531_high_24
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15531_high_24
NF15531_high_24
[»] chr2 (33 HSPs)
chr2 (55-224)||(37009953-37010135)
chr2 (17-56)||(13197645-13197684)
chr2 (17-54)||(16108475-16108512)
chr2 (17-56)||(15228149-15228188)
chr2 (17-56)||(22897389-22897428)
chr2 (17-55)||(16805791-16805829)
chr2 (17-55)||(16845072-16845110)
chr2 (111-156)||(13238929-13238974)
chr2 (17-56)||(11201681-11201720)
chr2 (17-56)||(34883848-34883887)
chr2 (21-55)||(1360055-1360089)
chr2 (22-56)||(8841395-8841429)
chr2 (17-55)||(8990203-8990241)
chr2 (17-55)||(11865289-11865327)
chr2 (17-55)||(20252209-20252247)
chr2 (20-54)||(32120944-32120978)
chr2 (17-55)||(34062665-34062703)
chr2 (17-55)||(40607701-40607739)
chr2 (17-55)||(41450515-41450553)
chr2 (17-54)||(1359791-1359828)
chr2 (17-54)||(2438225-2438262)
chr2 (18-55)||(6027617-6027654)
chr2 (17-54)||(7491844-7491881)
chr2 (17-54)||(8716892-8716929)
chr2 (17-54)||(11852185-11852222)
chr2 (111-156)||(17220436-17220481)
chr2 (17-54)||(17408294-17408331)
chr2 (17-54)||(26334845-26334882)
chr2 (17-54)||(27560206-27560243)
chr2 (21-54)||(29239333-29239366)
chr2 (17-54)||(36131028-36131065)
chr2 (17-49)||(30466110-30466142)
chr2 (17-49)||(41968202-41968234)
[»] chr6 (12 HSPs)
chr6 (17-56)||(25197150-25197189)
chr6 (20-54)||(25024509-25024543)
chr6 (17-56)||(7772174-7772213)
chr6 (20-54)||(1730104-1730138)
chr6 (17-55)||(4844399-4844437)
chr6 (17-55)||(9341837-9341875)
chr6 (17-55)||(30248646-30248684)
chr6 (17-54)||(231105-231142)
chr6 (21-54)||(1779784-1779817)
chr6 (17-54)||(8743188-8743225)
chr6 (17-54)||(29036126-29036163)
chr6 (17-54)||(34301832-34301869)
[»] chr4 (33 HSPs)
chr4 (17-56)||(17610020-17610059)
chr4 (17-55)||(24754077-24754115)
chr4 (18-55)||(6462691-6462728)
chr4 (17-54)||(6753525-6753562)
chr4 (17-54)||(15241480-15241517)
chr4 (17-56)||(28298371-28298410)
chr4 (17-56)||(45742806-45742845)
chr4 (17-55)||(4035824-4035862)
chr4 (17-51)||(4549889-4549923)
chr4 (17-51)||(20747173-20747207)
chr4 (17-54)||(4455060-4455097)
chr4 (17-54)||(5375557-5375594)
chr4 (17-54)||(5743659-5743696)
chr4 (17-54)||(9328240-9328277)
chr4 (17-54)||(10588075-10588112)
chr4 (17-54)||(19282081-19282118)
chr4 (17-54)||(30771528-30771565)
chr4 (17-54)||(32032993-32033030)
chr4 (17-54)||(33413518-33413555)
chr4 (17-54)||(34273219-34273256)
chr4 (17-54)||(39144404-39144441)
chr4 (17-54)||(44294789-44294826)
chr4 (17-54)||(47806860-47806897)
chr4 (18-47)||(49490169-49490198)
chr4 (17-54)||(50352064-50352101)
chr4 (17-54)||(50533884-50533921)
chr4 (17-54)||(52977982-52978019)
chr4 (17-54)||(55632259-55632296)
chr4 (18-54)||(26626003-26626039)
chr4 (20-56)||(26889902-26889938)
chr4 (20-56)||(30050087-30050123)
chr4 (18-54)||(36901111-36901147)
chr4 (17-49)||(54623806-54623838)
[»] chr3 (37 HSPs)
chr3 (17-56)||(7051720-7051759)
chr3 (17-55)||(26221287-26221325)
chr3 (17-55)||(32963105-32963143)
chr3 (17-55)||(33868447-33868485)
chr3 (17-54)||(20656310-20656347)
chr3 (17-56)||(7181348-7181387)
chr3 (20-55)||(10044841-10044876)
chr3 (17-56)||(12050392-12050431)
chr3 (17-56)||(22103929-22103968)
chr3 (17-56)||(25149122-25149161)
chr3 (17-56)||(28673294-28673333)
chr3 (17-56)||(37728711-37728750)
chr3 (17-56)||(44543780-44543819)
chr3 (17-56)||(51284062-51284101)
chr3 (113-156)||(53078431-53078474)
chr3 (20-54)||(32978481-32978515)
chr3 (17-55)||(35868083-35868121)
chr3 (17-55)||(43868102-43868140)
chr3 (17-54)||(9499497-9499534)
chr3 (17-54)||(10220933-10220970)
chr3 (17-54)||(14428610-14428647)
chr3 (17-54)||(16435236-16435273)
chr3 (17-54)||(21458982-21459019)
chr3 (17-54)||(21756486-21756523)
chr3 (18-55)||(23776495-23776532)
chr3 (17-54)||(26593765-26593802)
chr3 (17-54)||(27646306-27646343)
chr3 (17-54)||(30041017-30041054)
chr3 (17-54)||(33212397-33212434)
chr3 (17-54)||(36005502-36005539)
chr3 (17-54)||(45252773-45252810)
chr3 (17-54)||(46049986-46050023)
chr3 (17-54)||(48887946-48887983)
chr3 (17-54)||(50517522-50517559)
chr3 (17-54)||(53164163-53164200)
chr3 (18-54)||(4024052-4024088)
chr3 (20-56)||(45745776-45745812)
[»] chr8 (29 HSPs)
chr8 (17-55)||(40529306-40529344)
chr8 (17-55)||(43654203-43654241)
chr8 (17-55)||(44748463-44748501)
chr8 (17-54)||(36177103-36177140)
chr8 (18-54)||(44502620-44502656)
chr8 (17-56)||(5774046-5774085)
chr8 (17-56)||(13153926-13153965)
chr8 (17-56)||(28572044-28572083)
chr8 (17-56)||(28579637-28579676)
chr8 (17-56)||(34490515-34490554)
chr8 (17-56)||(34568488-34568527)
chr8 (113-156)||(41408271-41408314)
chr8 (17-55)||(8251933-8251971)
chr8 (17-55)||(18754143-18754181)
chr8 (17-55)||(32675757-32675795)
chr8 (17-54)||(51095-51132)
chr8 (17-54)||(1774342-1774379)
chr8 (17-54)||(2944272-2944309)
chr8 (17-54)||(7758909-7758946)
chr8 (17-54)||(8951428-8951465)
chr8 (17-54)||(14699452-14699489)
chr8 (17-54)||(28192175-28192212)
chr8 (111-156)||(29970881-29970926)
chr8 (17-54)||(33745895-33745932)
chr8 (17-54)||(37023284-37023321)
chr8 (17-54)||(39029178-39029215)
chr8 (124-156)||(15677739-15677771)
chr8 (20-56)||(35179598-35179634)
chr8 (18-54)||(41014504-41014540)
[»] chr7 (29 HSPs)
chr7 (17-55)||(29177252-29177290)
chr7 (17-55)||(34979077-34979115)
chr7 (17-54)||(7703820-7703857)
chr7 (17-54)||(20074889-20074926)
chr7 (17-54)||(25247690-25247727)
chr7 (17-56)||(6387323-6387362)
chr7 (17-56)||(12930316-12930355)
chr7 (17-56)||(32814431-32814470)
chr7 (17-56)||(33858866-33858905)
chr7 (17-56)||(39871613-39871652)
chr7 (17-55)||(29286037-29286075)
chr7 (17-55)||(36698131-36698169)
chr7 (17-55)||(38858297-38858335)
chr7 (17-54)||(18751982-18752019)
chr7 (17-54)||(19292839-19292876)
chr7 (17-54)||(19845669-19845706)
chr7 (17-54)||(19920563-19920600)
chr7 (17-54)||(21119557-21119594)
chr7 (17-54)||(21295151-21295188)
chr7 (17-54)||(26255096-26255133)
chr7 (17-54)||(32872375-32872412)
chr7 (17-54)||(39197718-39197755)
chr7 (17-54)||(41026096-41026133)
chr7 (17-54)||(41252361-41252398)
chr7 (17-54)||(48521029-48521066)
chr7 (17-49)||(9299102-9299134)
chr7 (17-49)||(17317446-17317478)
chr7 (20-56)||(22991747-22991783)
chr7 (18-54)||(40300230-40300266)
[»] chr5 (22 HSPs)
chr5 (17-55)||(15190815-15190853)
chr5 (17-55)||(41384172-41384210)
chr5 (17-56)||(16127257-16127296)
chr5 (21-56)||(41383910-41383945)
chr5 (17-56)||(41641093-41641132)
chr5 (20-54)||(2106831-2106865)
chr5 (17-55)||(3686754-3686792)
chr5 (17-55)||(6673228-6673266)
chr5 (17-55)||(14913647-14913685)
chr5 (17-55)||(22527691-22527729)
chr5 (17-55)||(22657767-22657805)
chr5 (17-55)||(26894873-26894911)
chr5 (17-55)||(35547260-35547298)
chr5 (17-55)||(40004409-40004447)
chr5 (17-55)||(40643093-40643131)
chr5 (17-54)||(1265949-1265986)
chr5 (17-54)||(9828393-9828430)
chr5 (17-54)||(13660861-13660898)
chr5 (18-55)||(34662203-34662240)
chr5 (18-54)||(7951562-7951598)
chr5 (20-56)||(9020692-9020728)
chr5 (20-56)||(24857554-24857590)
[»] scaffold0457 (1 HSPs)
scaffold0457 (17-54)||(4663-4700)
[»] chr1 (29 HSPs)
chr1 (20-56)||(16576095-16576131)
chr1 (21-56)||(7784258-7784293)
chr1 (17-56)||(11741395-11741434)
chr1 (17-56)||(18237092-18237131)
chr1 (21-56)||(30289600-30289635)
chr1 (17-56)||(37951949-37951988)
chr1 (17-56)||(39497431-39497470)
chr1 (17-56)||(50007973-50008012)
chr1 (17-56)||(50246929-50246968)
chr1 (17-55)||(4102714-4102752)
chr1 (17-55)||(22567065-22567103)
chr1 (17-55)||(45039411-45039449)
chr1 (17-55)||(50008483-50008521)
chr1 (17-55)||(52431174-52431212)
chr1 (17-54)||(943637-943674)
chr1 (17-54)||(1039381-1039418)
chr1 (17-54)||(1046287-1046324)
chr1 (17-54)||(15811232-15811269)
chr1 (17-54)||(23541979-23542016)
chr1 (17-54)||(30290265-30290302)
chr1 (20-49)||(34503240-34503269)
chr1 (17-54)||(36694854-36694891)
chr1 (17-54)||(36710955-36710992)
chr1 (17-54)||(39363194-39363231)
chr1 (17-54)||(44649629-44649666)
chr1 (17-54)||(46075867-46075904)
chr1 (17-54)||(49907021-49907058)
chr1 (17-53)||(30289862-30289898)
chr1 (17-49)||(45285810-45285842)
[»] scaffold0250 (1 HSPs)
scaffold0250 (17-56)||(9426-9465)
[»] scaffold0008 (1 HSPs)
scaffold0008 (17-56)||(259122-259161)
[»] scaffold0122 (1 HSPs)
scaffold0122 (17-55)||(12064-12102)
[»] scaffold0121 (1 HSPs)
scaffold0121 (17-55)||(24630-24668)
[»] scaffold0029 (1 HSPs)
scaffold0029 (17-55)||(51682-51720)
[»] scaffold0012 (2 HSPs)
scaffold0012 (17-55)||(47639-47677)
scaffold0012 (21-54)||(47904-47937)
[»] scaffold0604 (1 HSPs)
scaffold0604 (17-54)||(3782-3819)
[»] scaffold0019 (1 HSPs)
scaffold0019 (17-54)||(117846-117883)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 37010135 - 37009953
Alignment:
Q  55 ttctctcttttatcgtaaaccaactcaaacaaaaattgtttgatcatacattaatgtttaactaacatcaattttacaaatttaattcaatcaaaatcaa 154  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  37010135 ttctctcttttatcctaaacctactcaaacaaaaattgtttgatcatacattaatgtttaactaaaatcaattttacaaatttaattcaatcaaaatcag 37010036  T
Q  155 tta-------------caacacacgcttaaaatcatatttatactcatttttaattttgggtctacacaaaatcgacttagct 224  Q
    |||              |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37010035 ttaataatatagaatgaaacacacgcttaaaatcatatttatactcattcttaattttgggtctacacaaaatcgacttagct 37009953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 13197645 - 13197684
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13197645 ttctcaaaagaatcttataattagggacggagggagtatt 13197684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 16108475 - 16108512
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16108475 ttctcaaaagaatcttataattagggacggagggagta 16108512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 15228149 - 15228188
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  15228149 ttctcaaaaggatcttataattagggacggagggagtatt 15228188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 22897428 - 22897389
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22897428 ttctcaaaaggatcttataattagggacggagggagtatt 22897389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 16805791 - 16805829
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16805791 ttctcaaaaggatcttataattagggacggagggagtat 16805829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 16845072 - 16845110
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  16845072 ttctcaaaaggatcttataattagggacggagggagtat 16845110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 13238929 - 13238974
Alignment:
Q  111 tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt 156  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  13238929 tttaactaaaatcaattttacaaaatgaattcaatcaaaatcaatt 13238974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 11201720 - 11201681
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  11201720 ttctcaaaagggtcttataattagggacggagggagtatt 11201681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 34883848 - 34883887
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  34883848 ttctcaaaagggtcttataattagggacggagggagtatt 34883887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 1360055 - 1360089
Alignment:
Q  21 caaaagaatcttataattagggacggagggagtat 55  Q
    ||||||| |||||||||||||||||||||||||||    
T  1360055 caaaagagtcttataattagggacggagggagtat 1360089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 8841429 - 8841395
Alignment:
Q  22 aaaagaatcttataattagggacggagggagtatt 56  Q
    |||||| ||||||||||||||||||||||||||||    
T  8841429 aaaagagtcttataattagggacggagggagtatt 8841395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 8990241 - 8990203
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  8990241 ttctcaaaaagatcttataattagggacggagggagtat 8990203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 11865289 - 11865327
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  11865289 ttctcaaaagagtcttataattagggacggaggtagtat 11865327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 20252247 - 20252209
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  20252247 ttctcaaaagggtcttataattagggacggagggagtat 20252209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 32120978 - 32120944
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  32120978 tcaaaaggatcttataattagggacggagggagta 32120944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 34062665 - 34062703
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  34062665 ttctcaaaagggtcttataattagggacggagggagtat 34062703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 40607739 - 40607701
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  40607739 ttctcaaaagggtcttataattagggacggagggagtat 40607701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 41450553 - 41450515
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  41450553 ttctcaaaagggtcttataattagggacggagggagtat 41450515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1359828 - 1359791
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  1359828 ttctccaaaggatcttataattagggacggagggagta 1359791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 2438262 - 2438225
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  2438262 ttctcaaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 6027654 - 6027617
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  6027654 tctcaaaaggatcttataattagggacggaggtagtat 6027617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 7491881 - 7491844
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  7491881 ttctcaaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 8716892 - 8716929
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8716892 ttctcaaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 11852185 - 11852222
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  11852185 ttctcaaaaggatcttataattagggacggaggtagta 11852222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 17220436 - 17220481
Alignment:
Q  111 tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt 156  Q
    |||||||||  |||||||||||||  ||||||||||||||||||||    
T  17220436 tttaactaaagtcaattttacaaaactaattcaatcaaaatcaatt 17220481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 17408294 - 17408331
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  17408294 ttctcaaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 26334845 - 26334882
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  26334845 ttctcaaaagagtcttataattagggacggaggtagta 26334882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 27560243 - 27560206
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  27560243 ttctcaaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 29239366 - 29239333
Alignment:
Q  21 caaaagaatcttataattagggacggagggagta 54  Q
    ||||||| ||||||||||||||||||||||||||    
T  29239366 caaaagagtcttataattagggacggagggagta 29239333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 36131028 - 36131065
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  36131028 ttctcaaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 30466142 - 30466110
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagg 49  Q
    |||||||||| ||||||||||||||||||||||    
T  30466142 ttctcaaaaggatcttataattagggacggagg 30466110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 41968202 - 41968234
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagg 49  Q
    |||||||||| ||||||||||||||||||||||    
T  41968202 ttctcaaaaggatcttataattagggacggagg 41968234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 25197189 - 25197150
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  25197189 ttctcaaaaggatcttataattagggacggagggagtatt 25197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 25024509 - 25024543
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||||||||||||||||||||||||||||    
T  25024509 tcaaaagaatcttataattagggacggagggagta 25024543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 7772213 - 7772174
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  7772213 ttctcaaaagagtcttataattagggacggaggtagtatt 7772174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 1730104 - 1730138
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  1730104 tcaaaaggatcttataattagggacggagggagta 1730138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 4844437 - 4844399
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagtat 4844399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 9341875 - 9341837
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  9341875 ttctcaaaaggatcttataattagggacggaggtagtat 9341837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 30248684 - 30248646
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  30248684 ttctcaaaagggtcttataattagggacggagggagtat 30248646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 231105 - 231142
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  231105 ttctcaaaagggtcttataattagggacggagggagta 231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 1779817 - 1779784
Alignment:
Q  21 caaaagaatcttataattagggacggagggagta 54  Q
    |||||| |||||||||||||||||||||||||||    
T  1779817 caaaaggatcttataattagggacggagggagta 1779784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 8743225 - 8743188
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8743225 ttctcaaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 29036163 - 29036126
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  29036163 ttctcaaaaggatcttataattaggaacggagggagta 29036126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 34301832 - 34301869
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  34301832 ttctcaaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 17610020 - 17610059
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  17610020 ttctcaaaaggatcttataattagggacggagggagtatt 17610059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 24754115 - 24754077
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  24754115 ttctcaaaaggatcttataattagggacggagggagtat 24754077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 6462691 - 6462728
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||||||||||||||||||||||||| |||||    
T  6462691 tctcaaaagaatcttataattagggacggaggtagtat 6462728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 6753562 - 6753525
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6753562 ttctcaaaaggatcttataattagggacggagggagta 6753525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 15241517 - 15241480
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  15241517 ttctcaaaagagtcttataattagggacggagggagta 15241480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 28298371 - 28298410
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  28298371 ttctcaaaaggatcttataattagggacggaggtagtatt 28298410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 45742806 - 45742845
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  45742806 ttctcaaaagggtcttataattagggacggagggagtatt 45742845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 4035862 - 4035824
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4035862 ttctcaaaagggtcttataattagggacggagggagtat 4035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 4549889 - 4549923
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggaggga 51  Q
    ||||||||||| |||||||||||||||||||||||    
T  4549889 ttctcaaaagagtcttataattagggacggaggga 4549923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 20747207 - 20747173
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggaggga 51  Q
    |||||||| ||||||||||||||||||||||||||    
T  20747207 ttctcaaaggaatcttataattagggacggaggga 20747173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 4455097 - 4455060
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  4455097 ttctcaaaagagtcttataattagggacggatggagta 4455060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 5375557 - 5375594
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  5375557 ttctcaaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 5743659 - 5743696
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  5743659 ttctcaaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 9328240 - 9328277
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  9328240 ttctcaaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 10588112 - 10588075
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| || ||||||||||||||||||||||||    
T  10588112 ttctcaaaaggatgttataattagggacggagggagta 10588075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 19282081 - 19282118
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  19282081 ttctcaaaaggatcttataattagggacgtagggagta 19282118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 30771565 - 30771528
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30771565 ttctcaaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 32032993 - 32033030
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  32032993 ttctcaaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 33413555 - 33413518
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  33413555 ttctcaaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 34273219 - 34273256
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  34273219 ttctcaaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 39144441 - 39144404
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  39144441 ttcttaaaaggatcttataattagggacggagggagta 39144404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 44294826 - 44294789
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  44294826 ttctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 47806897 - 47806860
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  47806897 ttctcaaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 49490169 - 49490198
Alignment:
Q  18 tctcaaaagaatcttataattagggacgga 47  Q
    ||||||||||||||||||||||||||||||    
T  49490169 tctcaaaagaatcttataattagggacgga 49490198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 50352101 - 50352064
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  50352101 ttctcaaaaggatcttataattagagacggagggagta 50352064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 50533921 - 50533884
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||  |||||||||||||||||||||||||||    
T  50533921 ttctcaaaatgatcttataattagggacggagggagta 50533884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 52978019 - 52977982
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  52978019 ttctcaaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 55632259 - 55632296
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  55632259 ttctcaaaaggatcttataattagagacggagggagta 55632296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 26626003 - 26626039
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||  ||||||||||||||||||||||||||    
T  26626003 tctcaaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 26889902 - 26889938
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  26889902 tcaaaaggatcttataattagggacggaggtagtatt 26889938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 30050087 - 30050123
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  30050087 tcaaaagagtcttataattagggacggaggtagtatt 30050123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36901111 - 36901147
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  36901111 tctcaaaaggatcttataattagggacggaggtagta 36901147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 54623838 - 54623806
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagg 49  Q
    |||||||||| ||||||||||||||||||||||    
T  54623838 ttctcaaaaggatcttataattagggacggagg 54623806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 7051720 - 7051759
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  7051720 ttctcaaaaggatcttataattagggacggagggagtatt 7051759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 26221325 - 26221287
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  26221325 ttctcaaaagagtcttataattagggacggagggagtat 26221287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 32963105 - 32963143
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  32963105 ttctcaaaaggatcttataattagggacggagggagtat 32963143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 33868485 - 33868447
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33868485 ttctcaaaaggatcttataattagggacggagggagtat 33868447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 20656310 - 20656347
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20656310 ttctcaaaagaatcttataattaggaacggagggagta 20656347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 7181387 - 7181348
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  7181387 ttctcaaaagggtcttataattagggacggagggagtatt 7181348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 10044876 - 10044841
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10044876 tcaaaaggatcttataattagggacggagggagtat 10044841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 12050392 - 12050431
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  12050392 ttctcaaaagggtcttataattagggacggagggagtatt 12050431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 22103929 - 22103968
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  22103929 ttctcaaaagggtcttataattagggacggagggagtatt 22103968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 25149122 - 25149161
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  25149122 ttctcaaaagggtcttataattagggacggagggagtatt 25149161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 28673294 - 28673333
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  28673294 ttctcaaaaggatcttataattagggacggaggtagtatt 28673333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 37728750 - 37728711
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  37728750 ttctcaaaagggtcttataattagggacggagggagtatt 37728711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 44543819 - 44543780
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  44543819 ttctcaaaagggtcttataattagggacggagggagtatt 44543780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 51284062 - 51284101
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagtatt 51284101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 53078431 - 53078474
Alignment:
Q  113 taactaacatcaattttacaaatttaattcaatcaaaatcaatt 156  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||    
T  53078431 taactaaaatcaattctacaaaattaattcaatcaaaatcaatt 53078474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 32978515 - 32978481
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||| |||||||||||||||||||||||||||    
T  32978515 tcaaaaggatcttataattagggacggagggagta 32978481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 35868083 - 35868121
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  35868083 ttctcaaaagggtcttataattagggacggagggagtat 35868121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 43868140 - 43868102
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  43868140 ttctcaaaagggtcttataattagggacggagggagtat 43868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 9499497 - 9499534
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  9499497 ttctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 10220970 - 10220933
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 14428647 - 14428610
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  14428647 ttctcaaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 16435236 - 16435273
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  16435236 ttctcaaaaggatcttataattagagacggagggagta 16435273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 21459019 - 21458982
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  21459019 ttctcaaaaggatcttataattagggacggaggtagta 21458982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 21756523 - 21756486
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21756523 ttctcaaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 23776495 - 23776532
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  23776495 tctcaaaaaaatcttataattagggacggaggtagtat 23776532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 26593765 - 26593802
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26593765 ttctcaaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 27646306 - 27646343
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  27646306 ttctcaaaaggatcttataattagggacggaggtagta 27646343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 30041017 - 30041054
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  30041017 ttctcaaaagagtcttataattaggaacggagggagta 30041054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 33212434 - 33212397
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  33212434 ttctcaaaaggatcttataattagggacggaggtagta 33212397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 36005539 - 36005502
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  36005539 ttctcaaaaaaatcttataattagggacggaggaagta 36005502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 45252810 - 45252773
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  45252810 ttctcaaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 46049986 - 46050023
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  46049986 ttctcaaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 48887946 - 48887983
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  48887946 ttctcaaaagaatcttataattatggacggaggtagta 48887983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 50517522 - 50517559
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  50517522 ttctcaaaaggatcttataattagggacggaggtagta 50517559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 53164200 - 53164163
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  53164200 ttctcaaaaggatcttataattagggacggaggtagta 53164163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4024088 - 4024052
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||  ||||||||||||||||||||||||||    
T  4024088 tctcaaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 45745812 - 45745776
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||| |||||||||| |||||||||||||||||    
T  45745812 tcaaaagagtcttataatttgggacggagggagtatt 45745776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 40529344 - 40529306
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  40529344 ttctcaaaaggatcttataattagggacggagggagtat 40529306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 43654203 - 43654241
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  43654203 ttctcaaaagagtcttataattagggacggagggagtat 43654241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 44748463 - 44748501
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  44748463 ttctcaaaagaatcttataattagggacggaggtagtat 44748501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 36177103 - 36177140
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  36177103 ttctcaaaagagtcttataattagggacggagggagta 36177140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 44502656 - 44502620
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44502656 tctcaaaaggatcttataattagggacggagggagta 44502620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 5774085 - 5774046
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  5774085 ttctcaaaagagtcttataattagggacggaggtagtatt 5774046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 13153965 - 13153926
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  13153965 ttctcaaaagggtcttataattagggacggagggagtatt 13153926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 28572083 - 28572044
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagtatt 28572044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 28579676 - 28579637
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  28579676 ttctcaaaagggtcttataattagggacggagggagtatt 28579637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 34490554 - 34490515
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  34490554 ttctcaaaaagatcttataattagggacggagggagtatt 34490515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 34568527 - 34568488
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagtatt 34568488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 41408271 - 41408314
Alignment:
Q  113 taactaacatcaattttacaaatttaattcaatcaaaatcaatt 156  Q
    ||||||| ||||||| |||||| |||||||||||||||||||||    
T  41408271 taactaaaatcaattctacaaaattaattcaatcaaaatcaatt 41408314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 8251933 - 8251971
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  8251933 ttctcaaaagggtcttataattagggacggagggagtat 8251971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 18754181 - 18754143
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  18754181 ttctcaaaagggtcttataattagggacggagggagtat 18754143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 32675757 - 32675795
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  32675757 ttctcaaaagggtcttataattagggacggagggagtat 32675795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 51095 - 51132
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  51095 ttctcaaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1774379 - 1774342
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1774379 ttctcaaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 2944272 - 2944309
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  2944272 ttctcaaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 7758909 - 7758946
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  7758909 ttctcaaaagtgtcttataattagggacggagggagta 7758946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 8951428 - 8951465
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8951428 ttctcaaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 14699489 - 14699452
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  14699489 ttctcaaaaggatcttataattagggacggaggaagta 14699452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 28192175 - 28192212
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  28192175 ttctcaaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 29970881 - 29970926
Alignment:
Q  111 tttaactaacatcaattttacaaatttaattcaatcaaaatcaatt 156  Q
    ||||||||| ||||||| |||||||| ||||| |||||||||||||    
T  29970881 tttaactaaaatcaattatacaaattcaattctatcaaaatcaatt 29970926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 33745895 - 33745932
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  33745895 ttctcaaaaggatcttataattaggaacggagggagta 33745932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 37023284 - 37023321
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  37023284 ttctcaaaagagtcttataattagggacggaggcagta 37023321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 39029215 - 39029178
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  39029215 ttctcaaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 15677771 - 15677739
Alignment:
Q  124 aattttacaaatttaattcaatcaaaatcaatt 156  Q
    ||||||| |||||||||||||||||||||||||    
T  15677771 aattttataaatttaattcaatcaaaatcaatt 15677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 35179634 - 35179598
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  35179634 tcaaaagagtcttataattagggacggaggtagtatt 35179598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 41014540 - 41014504
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||  |||||||||||||||||||||||||||    
T  41014540 tctcaaaaagatcttataattagggacggagggagta 41014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 29177252 - 29177290
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29177252 ttctcaaaaggatcttataattagggacggagggagtat 29177290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 34979077 - 34979115
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34979077 ttctcaaaagagtcttataattagggacggagggagtat 34979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 7703820 - 7703857
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7703820 ttctcaaaagaatcttataattaaggacggagggagta 7703857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 20074926 - 20074889
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  20074926 ttctcaaaagaatattataattagggacggagggagta 20074889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 25247690 - 25247727
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  25247690 ttctcaaaagagtcttataattagggacggagggagta 25247727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 6387362 - 6387323
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  6387362 ttctcaaaagagtcttataattagagacggagggagtatt 6387323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 12930355 - 12930316
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  12930355 ttctcaaaagagtcttataattagggacggaggtagtatt 12930316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 32814470 - 32814431
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  32814470 ttctcaaaagggtcttataattagggacggagggagtatt 32814431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 33858866 - 33858905
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  33858866 ttctcaaaagggtcttataattagggacggagggagtatt 33858905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 39871613 - 39871652
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  39871613 ttctcaaaagggtcttataattagggacggagggagtatt 39871652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 29286037 - 29286075
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  29286037 ttctcaaaagggtcttataattagggacggagggagtat 29286075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 36698131 - 36698169
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  36698131 ttctcaaaagggtcttataattagggacggagggagtat 36698169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 38858335 - 38858297
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  38858335 ttctcaaaagggtcttataattagggacggagggagtat 38858297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 18751982 - 18752019
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  18751982 ttctcaaaagagtcttataattagggacggaggtagta 18752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 19292876 - 19292839
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  19292876 ttctcaaaaggatcttataattagggacggaggtagta 19292839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 19845669 - 19845706
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  19845669 ttctcaaaaggatcttataattagggacggaggtagta 19845706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 19920600 - 19920563
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  19920600 ttctcaaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 21119594 - 21119557
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  21119594 ttctcaaaaggatcttataattagggacggaggtagta 21119557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 21295188 - 21295151
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21295188 ttctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 26255133 - 26255096
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 32872375 - 32872412
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  32872375 ttctcaaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 39197755 - 39197718
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  39197755 ttctcaaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 41026096 - 41026133
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  41026096 ttctcaaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 41252361 - 41252398
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  41252361 ttctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 48521066 - 48521029
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  48521066 ttctcaaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9299134 - 9299102
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagg 49  Q
    |||||||||| ||||||||||||||||||||||    
T  9299134 ttctcaaaagtatcttataattagggacggagg 9299102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 17317478 - 17317446
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagg 49  Q
    |||||||||| ||||||||||||||||||||||    
T  17317478 ttctcaaaaggatcttataattagggacggagg 17317446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 22991747 - 22991783
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  22991747 tcaaaaggatcttataattagggacggaggtagtatt 22991783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 40300266 - 40300230
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||  ||||||||||||||||||||||||||    
T  40300266 tctcaaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 15190815 - 15190853
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  15190815 ttctcaaaagagtcttataattagggacggagggagtat 15190853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 41384172 - 41384210
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  41384172 ttctcaaaaggatcttataattagggacggagggagtat 41384210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 16127296 - 16127257
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  16127296 ttctcaaaagggtcttataattagggacggagggagtatt 16127257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 41383945 - 41383910
Alignment:
Q  21 caaaagaatcttataattagggacggagggagtatt 56  Q
    |||||| |||||||||||||||||||||||||||||    
T  41383945 caaaaggatcttataattagggacggagggagtatt 41383910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 41641132 - 41641093
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  41641132 ttctcaaaatgatcttataattagggacggagggagtatt 41641093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 2106865 - 2106831
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||||||||||||| ||||||||||||||    
T  2106865 tcaaaagaatcttataattatggacggagggagta 2106831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 3686754 - 3686792
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  3686754 ttctcaaaagagtcttataattagggacggaaggagtat 3686792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 6673228 - 6673266
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  6673228 ttctcaaaagggtcttataattagggacggagggagtat 6673266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 14913685 - 14913647
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  14913685 ttctcaaaagggtcttataattagggacggagggagtat 14913647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 22527729 - 22527691
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  22527729 ttctcaaaagggtcttataattagggacggagggagtat 22527691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 22657805 - 22657767
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  22657805 ttctcaaaaggatcttataattagggacggaggtagtat 22657767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 26894873 - 26894911
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  26894873 ttctcaaaagggtcttataattagggacggagggagtat 26894911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 35547298 - 35547260
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  35547298 ttctcaaaaaaatcttataattagggacggaggtagtat 35547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 40004409 - 40004447
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  40004409 ttctcaaaagggtcttataattagggacggagggagtat 40004447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 40643131 - 40643093
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  40643131 ttctcaaaaggatcttataattagggacggaggtagtat 40643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1265986 - 1265949
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1265986 ttctcaaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 9828430 - 9828393
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  9828430 ttctcaaaagggtcttataattagggacggagggagta 9828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 13660898 - 13660861
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  13660898 ttctcaaaaggatcttataattagagacggagggagta 13660861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 34662240 - 34662203
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||  |||||||||||||||||||||||||||    
T  34662240 tctcaaaagggtcttataattagggacggagggagtat 34662203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 7951598 - 7951562
Alignment:
Q  18 tctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||  ||||||||||||||||||||||||||    
T  7951598 tctcaaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 9020728 - 9020692
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||  ||||||||||||||||||||||||||||    
T  9020728 tcaaaagggtcttataattagggacggagggagtatt 9020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 24857590 - 24857554
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  24857590 tcaaaagagtcttataattagggacggaggtagtatt 24857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 4663 - 4700
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  4663 ttctcaaaagaatcttataattagggacggaggtagta 4700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 16576095 - 16576131
Alignment:
Q  20 tcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||| ||||||||||||||||||||||||||||    
T  16576095 tcaaaagagtcttataattagggacggagggagtatt 16576131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 7784258 - 7784293
Alignment:
Q  21 caaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7784258 caaaagagtcttataattagggacggagggagtatt 7784293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 11741434 - 11741395
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  11741434 ttctcaaaagggtcttataattagggacggagggagtatt 11741395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 18237131 - 18237092
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  18237131 ttctcaaaagagtcttataattagggacggaggtagtatt 18237092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 30289635 - 30289600
Alignment:
Q  21 caaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30289635 caaaagagtcttataattagggacggagggagtatt 30289600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 37951949 - 37951988
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  37951949 ttctcaaaagggtcttataattagggacggagggagtatt 37951988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 39497470 - 39497431
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  39497470 ttctcaaaagggtcttataattagggacggagggagtatt 39497431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 50008012 - 50007973
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  50008012 ttctcaaaagagtcttataattagggacagagggagtatt 50007973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 50246929 - 50246968
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  50246929 ttctcaaaaggatcttataattacggacggagggagtatt 50246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 4102714 - 4102752
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4102714 ttctcaaaagggtcttataattagggacggagggagtat 4102752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 22567103 - 22567065
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  22567103 ttctcaaaaggatcttataattagggacggaggtagtat 22567065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 45039449 - 45039411
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  45039449 ttctcaaaagggtcttataattagggacggagggagtat 45039411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 50008483 - 50008521
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  50008483 ttctcaaaatgatcttataattagggacggagggagtat 50008521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 52431174 - 52431212
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  52431174 ttctcaaaagggtcttataattagggacggagggagtat 52431212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 943637 - 943674
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  943637 ttctcaaaagggtcttataattagggacggagggagta 943674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 1039381 - 1039418
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1039381 ttctcaaaagggtcttataattagggacggagggagta 1039418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 1046287 - 1046324
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  1046287 ttctcaaaagggtcttataattagggacggagggagta 1046324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 15811232 - 15811269
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  15811232 ttctcaaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 23542016 - 23541979
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  23542016 ttctcaaaagggtcttataattagggacggagggagta 23541979  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 30290302 - 30290265
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  30290302 ttctcaaaagggtcttataattagggacggagggagta 30290265  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 34503269 - 34503240
Alignment:
Q  20 tcaaaagaatcttataattagggacggagg 49  Q
    ||||||||||||||||||||||||||||||    
T  34503269 tcaaaagaatcttataattagggacggagg 34503240  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 36694891 - 36694854
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  36694891 ttctcaaaagggtcttataattagggacggagggagta 36694854  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 36710992 - 36710955
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  36710992 ttctcaaaagggtcttataattagggacggagggagta 36710955  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 39363194 - 39363231
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  39363194 ttctcaaaagggtcttataattagggacggagggagta 39363231  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 44649666 - 44649629
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  44649666 ttctcaaaagggtcttataattagggacggagggagta 44649629  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 46075867 - 46075904
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  46075867 ttctcaaaagggtcttataattagggacggagggagta 46075904  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 49907058 - 49907021
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  49907058 ttctcaaaagggtcttataattagggacggagggagta 49907021  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 30289862 - 30289898
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagt 53  Q
    ||||||||||  |||||||||||||||||||||||||    
T  30289862 ttctcaaaagggtcttataattagggacggagggagt 30289898  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 45285810 - 45285842
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagg 49  Q
    ||||||||||| |||||||||||||||||||||    
T  45285810 ttctcaaaagagtcttataattagggacggagg 45285842  T

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Target: scaffold0250 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 9426 - 9465
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  9426 ttctcaaaaggatcttataattagggacggaggtagtatt 9465  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 259122 - 259161
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtatt 56  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  259122 ttctcaaaagggtcttataattagggacggagggagtatt 259161  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 12102 - 12064
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  12102 ttctcaaaagggtcttataattagggacggagggagtat 12064  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 24630 - 24668
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  24630 ttctcaaaaggatcttataattaggaacggagggagtat 24668  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 51682 - 51720
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  51682 ttctcaaaagggtcttataattagggacggagggagtat 51720  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 47677 - 47639
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagtat 55  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  47677 ttctcaaaagggtcttataattagggacggagggagtat 47639  T

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Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 47904 - 47937
Alignment:
Q  21 caaaagaatcttataattagggacggagggagta 54  Q
    |||||| |||||||||||||||||||||||||||    
T  47904 caaaaggatcttataattagggacggagggagta 47937  T

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Target: scaffold0604 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 3782 - 3819
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  3782 ttctcaaaagggtcttataattagggacggagggagta 3819  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 117883 - 117846
Alignment:
Q  17 ttctcaaaagaatcttataattagggacggagggagta 54  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  117883 ttctcaaaaggatcttataattagggacggaggaagta 117846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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