View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_high_3 (Length: 579)
Name: NF15531_high_3
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 14 - 564
Target Start/End: Original strand, 40439325 - 40439879
Alignment:
| Q |
14 |
agaacgaaggcagtggttccgtttgggaggaggaagggggagcacgacggaggcgtttgaggatacggattggtgggtcgggttgagattctggatcgga |
113 |
Q |
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| T |
40439325 |
agaacgaaggcagtgattccgtttgggaggaggaagggggagcacgacggagacgtttgaggatacggattggtgggtcgggttgagattctggatcgga |
40439424 |
T |
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| Q |
114 |
atcggggacttcttgtgggaccgggtcgtggttgggggaggtagatggagaaggtggtggtgtatcgtcaagatcgagacctagggagaatgatggagct |
213 |
Q |
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| T |
40439425 |
atcggggacttcttgtgggaccgggtcgtggttgggggaggtagatggagaaggtggtggtgtatcgtcaagatcgagacctagggagaatgatggagct |
40439524 |
T |
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| Q |
214 |
tcaaattcagccatggaaattgaaatccaaggattgagatcttgtttcggttgataagcttgtgtagtatggtgtggatttttaaataaactggattaaa |
313 |
Q |
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| T |
40439525 |
tcaaattcagccatggaaattgaaatccaaggattgtgatcttgttttggttgataaggttgtgtagtatagtgtggatttttaaataaactggattaaa |
40439624 |
T |
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| Q |
314 |
atttggtgcaaaattgtaaatgattttggcggggatttgaatttcaggaagggagaaggaattgagtga----ttattacatccgacacagatattttag |
409 |
Q |
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| T |
40439625 |
atttggtgcaacattgtaaatgattttggcggggatttgaatttcagggagggagaaggaattgagtgattatttattacatccgacacagatattttag |
40439724 |
T |
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| Q |
410 |
ggtggatactttacgaatctgagtttcattagtgttttagtttacccaaactaaacaatcttcatcgttaatgcaaaatcgaacggcacatattttgact |
509 |
Q |
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| T |
40439725 |
ggtgggtactttacgaatctgagtttcattagtgttttagtttacccaaactaaacaatcttcatcgttaatgcaaaatcgaacggcatatattttgact |
40439824 |
T |
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| Q |
510 |
aaactaaaatgtttaagatcaattgtttcttaatagtatatgtttgtatgttatt |
564 |
Q |
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| T |
40439825 |
aaactaaaatgtttaagatcaattgtttcttaatagtatatgtttgtatgttatt |
40439879 |
T |
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