View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15531_high_9 (Length: 443)
Name: NF15531_high_9
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 7900859 - 7901288
Alignment:
| Q |
1 |
gagccattacttccccttaacgataaagtatagccagtgtagtgcatattaactttggtttggcttcatgtacctctcacagtttcatgtcaaatgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7900859 |
gagccattacttccccttaacgataaagtatagccagtgtagtgtatattaactttggtttggcttcatgtacctctcacagtttcatgtcaaatgttga |
7900958 |
T |
|
| Q |
101 |
aataaatgtataaacaattacaccttcaaaaaatattattctttcctatactcagcctctacggaatccaataccttcaaaaaatttatcattattttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7900959 |
aataaatgtataaacaattacaccttcaaaaaatattattctttcctatactcagcctctacggaatccaataccttcaaaaaatttatcattattttac |
7901058 |
T |
|
| Q |
201 |
aaagtatacaactcattaaggaactaccaaattaacctagctcactttttatccttcatgcaacaaactgatagatcattttaccttctcattacaagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
7901059 |
aaagtatacaactcattaaggaactaccaaattaacctagctcactttttatccttcatgcaacaaactgatagatcatttcaccttctcaatacaagta |
7901158 |
T |
|
| Q |
301 |
ttcaa--nnnnnnnnnnnnnnnnnngtatatatatgtgcaccacaatgtatctgtactcacaagattcaaaataagtaaaaagaagttaaacatcaagca |
398 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901159 |
ttcaaacacacacacacacacacacgtatatatatgtgcaccacaatgtatctgtactcacaagattcaaaataagtaaaaagaagttaaacatcaagca |
7901258 |
T |
|
| Q |
399 |
gaacataatggcaagcttgggaagtttcat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7901259 |
gaacataatggcaagcttgggaagtttcat |
7901288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 31213273 - 31213322
Alignment:
| Q |
378 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttca |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213273 |
aaagaagttaaacatcaagcagaacataatggcaagcttgggaagtttca |
31213322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University