View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_1 (Length: 727)
Name: NF15531_low_1
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 159 - 467
Target Start/End: Original strand, 40433895 - 40434197
Alignment:
| Q |
159 |
tgttacatcagcgaatagcaacaacaaatttttaaaacaactaatagcaacaacagttttctatatggaattatatgaggaactccaatttaaattagac |
258 |
Q |
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| T |
40433895 |
tgttacatcagcgaatagcaacaacaaatttttaaaacaactaatagcaacaacagttttctatatggcattatatgaggaactccaatttaaattagac |
40433994 |
T |
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| Q |
259 |
aacaggacaaccaagatcatatgtgtatttccaattaacacaacttcataatgactcttacatccaactataacatgattaatttcataataaactatat |
358 |
Q |
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| T |
40433995 |
aacaggacaaccaagatcatatgtgtatttccaattaacacaacttcataatgacccttacatccaactataacatgattaatttcataataaactatat |
40434094 |
T |
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| Q |
359 |
ccgtatatgatgttggacttggtttcctaacctcatttggtcattcaattccaagtacaattttaaacatgttcacaagcatacctcaacgaacaaaaac |
458 |
Q |
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| T |
40434095 |
ccgtatatgatg------ttggtttcctaacctcatttggtcattcaattccaagtacaattttaaacatgttcacaagcatacctcaacgaacaaaaac |
40434188 |
T |
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| Q |
459 |
acatacaat |
467 |
Q |
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| T |
40434189 |
acatacaat |
40434197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 509 - 710
Target Start/End: Original strand, 40434199 - 40434400
Alignment:
| Q |
509 |
tccctctcacatatgaagtcaagtaagttaaatattatgtggtgagcggataaacagccagatcagcagtaatgataaaagtgttaccgtctcgaacaga |
608 |
Q |
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| T |
40434199 |
tccctctcacatatgaagtcaagaaagttaaatattctgtggtgagtggataaacagccagatcagcagtaatgataaaagtgttaccatctcgaacaga |
40434298 |
T |
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| Q |
609 |
ttctttgcctagatgtttcgcagcaacaactatgatttgcagaagcgctcagaaaacaagagcaagattccttttcaagttttgaacaaagaaagtactt |
708 |
Q |
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| T |
40434299 |
ttctttgcctagatgtttcgcagcaacaactatgatttgcagaagcgctcagaaaaaaagagcaagattccttttcaagttttgaacaaagaaagtactt |
40434398 |
T |
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| Q |
709 |
gt |
710 |
Q |
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| T |
40434399 |
gt |
40434400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 40433749 - 40433827
Alignment:
| Q |
13 |
aatattctatcaatctatgttagcatgcaatcatcacttaatcaatgtatgtgatctcctaattcttcacggctagcag |
91 |
Q |
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| T |
40433749 |
aatattctatcaatctatgttagcatgcaatcatcacttaatcaatgtatgtgatctcctgattcttcacggctagcag |
40433827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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