View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_10 (Length: 436)
Name: NF15531_low_10
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_10 |
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| [»] scaffold0475 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 26131641 - 26131222
Alignment:
| Q |
1 |
aggtatcaagatccttcaaacattcttctatttctttctcttcttccgcactaatattatcttcttcggcatgtgcaactgcttcctcgtatccatgatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131641 |
aggtatcaagatccttcaaacattcttctatttctttcttttcttccgcactaatatcatcttcttcggcatgtgcaactgcttcctcgtatccatgatt |
26131542 |
T |
|
| Q |
101 |
acgtcatcaaccgcatccatcttgaaacaagctcccttgtctttagaatgcttcataacttcaaataaattgaagtttacctcttcattctcaactcgga |
200 |
Q |
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| T |
26131541 |
acgtcatcaatcgcatccatcttgaaacaagctcccttgtctttagaatgcttcataacttcaaataaattgaagtttacctcttcattctcaactcgga |
26131442 |
T |
|
| Q |
201 |
tcttcaataatctgtcatcgaggtcaatcatcactctcgcagtttgcataaagatccttccaagaatcagaggcacatcatcatccttttcaatatctat |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26131441 |
tcttcattaatctgtcatcgaggtcaatcatcactctcacagtttgcataaaggtccttccaagaatcagaggcacatcatcatccttttcaatatctat |
26131342 |
T |
|
| Q |
301 |
caccacaaagtcaagtggaaataagaacttgtcaactttcactcaaacatcttcaactattccaatcggacgtgcgacaaatttgttggctagttgcaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26131341 |
caccacaaagtcaagtggaaataagaacttgtgaactttcactcaaacatcttcaaatattccaatcggacgtgcgacagatttgttggctagttgcaaa |
26131242 |
T |
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| Q |
401 |
gtcatccttgtattcttcat |
420 |
Q |
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| T |
26131241 |
gtcatccttgtattcttcat |
26131222 |
T |
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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 172 - 90
Alignment:
| Q |
74 |
tgcaactgcttcctcgtatccatgattacgtcatcaaccgcatccatcttgaaacaagctcccttgtctttagaatgcttcat |
156 |
Q |
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| T |
172 |
tgcaattgtttccttgtttccatgatgacttcatccattgcatccaccttgaaacaagctcctttgtctttggagtgcttcat |
90 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 1206 - 1124
Alignment:
| Q |
74 |
tgcaactgcttcctcgtatccatgattacgtcatcaaccgcatccatcttgaaacaagctcccttgtctttagaatgcttcat |
156 |
Q |
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| T |
1206 |
tgcaattgtttccttgtttccatgatgacttcatccattgcatccaccttgaaacaagctcctttgtctttggagtgcttcat |
1124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 14296170 - 14296252
Alignment:
| Q |
74 |
tgcaactgcttcctcgtatccatgattacgtcatcaaccgcatccatcttgaaacaagctcccttgtctttagaatgcttcat |
156 |
Q |
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| T |
14296170 |
tgcaattgtttccttgtttccatgatgacttcatccattgcatccaccttgaaacaagctcctttgtctttggagtgcttcat |
14296252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 7065423 - 7065341
Alignment:
| Q |
74 |
tgcaactgcttcctcgtatccatgattacgtcatcaaccgcatccatcttgaaacaagctcccttgtctttagaatgcttcat |
156 |
Q |
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| T |
7065423 |
tgcaattgtttccttgtttccatgatgacttcatccattgcatccaccttgaaacaagctcctttgtctttggagtgcttcat |
7065341 |
T |
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