View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_12 (Length: 383)
Name: NF15531_low_12
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 25540287 - 25540637
Alignment:
| Q |
18 |
ttaagtgtgtgtaaaaaatttgttttcataatttgtactttcaaggttatcaaatagcagctatagcgacactatggtgctatagtgtagcccaatttga |
117 |
Q |
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| T |
25540287 |
ttaagtgtgtgtaaaaaatttgttttcataatttgtactttcaatgttatcaaatagcagctatagcgacgctatggtgctatagtgtagcgcaatttga |
25540386 |
T |
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| Q |
118 |
acaaattgcttttgttgttatgcagggccggcctaagggtaaggccactaaagcccttacctttaaaaattattgggccggccctgatgtgcggtgcgct |
217 |
Q |
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| T |
25540387 |
acaaattgcttttgttgttatgcagggccggcctaagggtaaggccactaaagcccttacctttaaaaattattgggccggcccttatgtgcggtgcgct |
25540486 |
T |
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| Q |
218 |
atttagtacaaagtgtttgtgaaatagtagctgtagcggtgctagactacagcgttgcagaatttgtacaaataactattttttgtgggtggcaatgctg |
317 |
Q |
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| T |
25540487 |
atttagtacaaagtgtttgtgaaatagtagctgtagcggtgctagaccacagcgttgcagaatttgtacaaataactattttttgtgagtggcaatgctg |
25540586 |
T |
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| Q |
318 |
gttcttccataatttccattttgtgtacttgtattggcattatctgttttt |
368 |
Q |
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| T |
25540587 |
gttcttccataatttccattttgtgtacttgtattggcattatctgttttt |
25540637 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 14580199 - 14580165
Alignment:
| Q |
137 |
atgcagggccggcctaagggtaaggccactaaagc |
171 |
Q |
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| T |
14580199 |
atgcagggccggcctaagggtaaggccaccaaagc |
14580165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 47442539 - 47442507
Alignment:
| Q |
140 |
cagggccggcctaagggtaaggccactaaagcc |
172 |
Q |
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| T |
47442539 |
cagggccggcttaagggtaaggccactaaagcc |
47442507 |
T |
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