View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15531_low_14 (Length: 335)
Name: NF15531_low_14
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 37008625 - 37008932
Alignment:
| Q |
18 |
agtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtatacaataca |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008625 |
agtacaatcttagaattgttcacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtatacaataca |
37008724 |
T |
|
| Q |
118 |
cattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaagaaatata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008725 |
cattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaagaaatata |
37008824 |
T |
|
| Q |
218 |
aatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggcatcacatcagaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008825 |
aatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggcatcacatcagaaa |
37008924 |
T |
|
| Q |
318 |
tacctttg |
325 |
Q |
| |
|
|||||||| |
|
|
| T |
37008925 |
tacctttg |
37008932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 37025811 - 37025896
Alignment:
| Q |
22 |
caatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgt |
107 |
Q |
| |
|
||||||||| |||||| || | |||||||||||||||||| | || || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37025811 |
caatcttaggattgttcacgtgcatgtcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtctgt |
37025896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 37044809 - 37044892
Alignment:
| Q |
23 |
aatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
106 |
Q |
| |
|
|||||| | |||||| ||| ||||||||| |||| ||| | |||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
37044809 |
aatcttgggattgttcacaaccatgtcacagtctacgttcaacataaaaggagcattggtcatcaatccagagactcttgtctg |
37044892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 37035762 - 37035801
Alignment:
| Q |
266 |
tttggcctcttctctctagatatgtagattatgtgaggca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37035762 |
tttggcctcttctctctagatatgtagattaagtgaggca |
37035801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 37026237 - 37026267
Alignment:
| Q |
275 |
ttctctctagatatgtagattatgtgaggca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37026237 |
ttctctctagatatgtagattatgtgaggca |
37026267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 17657564 - 17657492
Alignment:
| Q |
222 |
ttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagat |
294 |
Q |
| |
|
||||||| |||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17657564 |
ttaccaacacattcatggcaccggctttgaaatgatgtggttgctttggcctcttctctctagatatgtagat |
17657492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 17657721 - 17657647
Alignment:
| Q |
32 |
attgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
106 |
Q |
| |
|
|||||||||| ||||||||||||| | ||| | ||| ||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
17657721 |
attgtttacaaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctg |
17657647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University