View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_15 (Length: 311)
Name: NF15531_low_15
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 5534714 - 5534433
Alignment:
| Q |
19 |
atgtgtcaacttaaaaaacgagctttcaaagatgtttttattatcttcgtcaacatatacaaaaacacggatatttaagtttacgggttaagtttttacc |
118 |
Q |
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| T |
5534714 |
atgtgtcaagttaaaaat-gagcttccaaagatgtttttattatcttcgtcaacatgtacaaaaacacggatatttaagtttacgggttaagtttttacc |
5534616 |
T |
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| Q |
119 |
gtatgtttaaccggaataacgtttgctaaggatatagacctctccttaatatcaagtcttaaagatagcaattaatctagagactatacccgatcctcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5534615 |
gtatgtttaaccggaataacgtttgctaaggatatagacctctccttaatatcaagtcttaaagatagcaattaatctagagactatacccgatcctcaa |
5534516 |
T |
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| Q |
219 |
gtttaaataattatctaaatcaacaattattctaatttgtatccaaataaagcgaccccaatatcattttagcattgcctatg |
301 |
Q |
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| T |
5534515 |
gtttaaataattctctaaatgaacaattattctaatttgtatccaaataaagcgaccccaatatcattttagcattgcctatg |
5534433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 35198759 - 35198799
Alignment:
| Q |
46 |
aaagatgtttttattatcttcgtcaacatatacaaaaacac |
86 |
Q |
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| T |
35198759 |
aaagatgtttttattatcttcgtcaacatgtacaaaaacac |
35198799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 19234294 - 19234254
Alignment:
| Q |
46 |
aaagatgtttttattatcttcgtcaacatatacaaaaacac |
86 |
Q |
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| T |
19234294 |
aaagatgtttttattatcttcgtcaacttgtacaaaaacac |
19234254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 19235871 - 19235838
Alignment:
| Q |
53 |
tttttattatcttcgtcaacatatacaaaaacac |
86 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
19235871 |
tttttattatcttcgtcaacatgtacaaaaacac |
19235838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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