View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_16 (Length: 301)
Name: NF15531_low_16
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 28184301 - 28184024
Alignment:
| Q |
17 |
accaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184301 |
accaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttg |
28184202 |
T |
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| Q |
117 |
ccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184201 |
ccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaat |
28184102 |
T |
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| Q |
217 |
ggagaacttcatccttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgct |
294 |
Q |
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| T |
28184101 |
ggagaacttcatccttcaagattttgcgagaaagatttgctcaaagttgtcgacagggagtatgtgtttgcctatgct |
28184024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 42609542 - 42609438
Alignment:
| Q |
162 |
tgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaatggagaacttcatccttcaagattttgcgagaaagatttgctcaaa |
261 |
Q |
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|||||||||||||||||| ||||| || ||||||| || ||| ||||||||||| || | ||||| ||||| ||||| ||||| ||||| ||||| |
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| T |
42609542 |
tgtcaagaacactgtaagtcaagtagccaagagaattctaacagttggtgtcaatggtgagttgcatccatcaaggttttgtgagaaggatttactcaat |
42609443 |
T |
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| Q |
262 |
gttgt |
266 |
Q |
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||||| |
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| T |
42609442 |
gttgt |
42609438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 40945118 - 40945352
Alignment:
| Q |
17 |
accaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttg |
116 |
Q |
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||||||| || ||||||||||||||||||||||| ||||||||| | || || ||||||||| | | |||||||||||||| |||||||| || ||||| |
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| T |
40945118 |
accaagatgtgaactctttgggtttgatttcttcgagaaaaacatatgaagccattgagatccttcaactcatgtcttccacattcttgattgctctttg |
40945217 |
T |
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| Q |
117 |
ccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaat |
216 |
Q |
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| T |
40945218 |
ccaagcaattgatttaagacatttggaggagaacttgaaaaactcagtcaagaacaccgtaagtcaagtcgccaaaaagacccttaccataggcgtgaat |
40945317 |
T |
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| Q |
217 |
ggagaacttcatccttcaagattttgcgagaaaga |
251 |
Q |
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| T |
40945318 |
ggagaacttcatccttcaagattttgtgaaaaaga |
40945352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 40959083 - 40959305
Alignment:
| Q |
17 |
accaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttg |
116 |
Q |
| |
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||||||| || |||||||||||||||||||| || ||||||||| | || || ||||||||| | | |||||||||||||| |||||||| || ||||| |
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| T |
40959083 |
accaagatgtgaactctttgggtttgatttcatcaagaaaaacatatgaagccattgagatccttcaactcatgtcttccacattcttgattgcactttg |
40959182 |
T |
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| Q |
117 |
ccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagccaagttgctaagagaacactcacaaccggtgtcaat |
216 |
Q |
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|||||||||||| || || |||||||| ||||| |||| ||| | ||||||||||| ||||| ||||| || || | || || || | || || ||| |
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| T |
40959183 |
ccaagcaattgatttaagacatttggaggagaacttgaaaaactcagtcaagaacaccgtaagtcaagtagccaaaaagacccttaccataggagtaaat |
40959282 |
T |
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| Q |
217 |
ggagaacttcatccttcaagatt |
239 |
Q |
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||||||||||| ||||||||||| |
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| T |
40959283 |
ggagaacttcaaccttcaagatt |
40959305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 43216865 - 43217028
Alignment:
| Q |
17 |
accaagacgttaactctttgggtttgatttcttctagaaaaacaaacgaggctattgagatcttaaagctcatgtcttccactttcttgatcgcgctttg |
116 |
Q |
| |
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||||||| || ||||||||||| ||||||||| ||| |||||| || || |||||||| || ||||||||||||||||| | ||| | || || || |
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| T |
43216865 |
accaagatgtgaactctttggggttgatttctgctatgaaaacagtggaagccattgagatattgaagctcatgtcttccacatatttggttgcactctg |
43216964 |
T |
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| Q |
117 |
ccaagcaattgacttgaggcatttggaagagaatttgaggaacactgtcaagaacactgtaagc |
180 |
Q |
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|||||| |||||||||||||||||||| || | ||| | |||| |||||||||| ||||||||| |
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| T |
43216965 |
ccaagctattgacttgaggcatttggaggaaattttcaagaactctgtcaagaaaactgtaagc |
43217028 |
T |
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