View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_18 (Length: 288)
Name: NF15531_low_18
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_18 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 1700209 - 1699922
Alignment:
| Q |
1 |
ctaataacaatgttggcacttcatggcactnnnnnnngatcgttaattgttggtgttctttgtgatgtcttcaatgtcatgatgtatgcatctcctctta |
100 |
Q |
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| T |
1700209 |
ctaataacaatgttggcacttcatggcactaaaaaaagatcgttaattgttggtgttctatgtgatgtcttcaatgtcatgatgtatgcatctcctctta |
1700110 |
T |
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| Q |
101 |
caatcatggtaagtctcaattaattccatgataatttaaatttgtatattgtaaaattgtgtcatccaattttaattttatatatctcttcttgatgtat |
200 |
Q |
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| T |
1700109 |
caatcatggtaagtctcaattaattccatgatcatttaaatttgtatattgtaaaattgtgtcatccaattttaattttatatatctcttcttgatgtat |
1700010 |
T |
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| Q |
201 |
ataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtctgtg |
288 |
Q |
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| T |
1700009 |
ataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatggtttgtg |
1699922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 1694919 - 1694836
Alignment:
| Q |
199 |
atataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccattttggctctctctaaccaacttcctcaatgg |
282 |
Q |
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| T |
1694919 |
atatgatgaacaggcaacggttataagaaccaagagtgtgaaatacatgccattctggctctctcttaccaacttcctcaatgg |
1694836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 1674322 - 1674269
Alignment:
| Q |
199 |
atataatgaacaggccaaggttataaaaaccaagagtgtgaaatacatgccatt |
252 |
Q |
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| T |
1674322 |
atataatgaacaggaaaatgttataaaaacaaagagtgtgaaatacatgccatt |
1674269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 1684677 - 1684567
Alignment:
| Q |
4 |
ataacaatgttggcacttcatggcactnnnnnnngatcgttaattgttggtgttctttgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaa |
103 |
Q |
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| T |
1684677 |
ataacaatgttggtatttcatggcactaccggcaggtctttaattgttggtattgtttgtgatgtcttcaacatattgatgtatatttctcctcttacaa |
1684578 |
T |
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| Q |
104 |
tcatggtaagt |
114 |
Q |
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||||||||||| |
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| T |
1684577 |
tcatggtaagt |
1684567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 1695100 - 1694990
Alignment:
| Q |
4 |
ataacaatgttggcacttcatggcactnnnnnnngatcgttaattgttggtgttctttgtgatgtcttcaatgtcatgatgtatgcatctcctcttacaa |
103 |
Q |
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||||||||||||||| | ||||||||| | || ||||||||||| || |||||||| ||||||| | |||||||||| ||||||||||| | |
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| T |
1695100 |
ataacaatgttggcattacatggcactaccaagaggtctttaattgttgggattatttgtgatatcttcaacatattgatgtatgcttctcctcttacga |
1695001 |
T |
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| Q |
104 |
tcatggtaagt |
114 |
Q |
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||||||||||| |
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| T |
1695000 |
tcatggtaagt |
1694990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 1684468 - 1684421
Alignment:
| Q |
215 |
aaggttataaaaaccaagagtgtgaaatacatgccattttggctctct |
262 |
Q |
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| T |
1684468 |
aaggttataacgactaagagtgtgaaatacatgccattctggctctct |
1684421 |
T |
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