View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15531_low_24 (Length: 242)

Name: NF15531_low_24
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15531_low_24
NF15531_low_24
[»] chr7 (4 HSPs)
chr7 (1-234)||(33928321-33928554)
chr7 (4-56)||(2461523-2461575)
chr7 (28-77)||(48892471-48892520)
chr7 (25-73)||(2950124-2950172)
[»] chr6 (2 HSPs)
chr6 (1-86)||(3616965-3617050)
chr6 (25-73)||(3911863-3911911)
[»] scaffold0489 (1 HSPs)
scaffold0489 (4-70)||(10256-10322)
[»] scaffold0140 (1 HSPs)
scaffold0140 (4-70)||(10706-10772)
[»] chr5 (2 HSPs)
chr5 (28-77)||(1318448-1318497)
chr5 (31-75)||(1283900-1283944)
[»] chr4 (2 HSPs)
chr4 (24-59)||(27808573-27808608)
chr4 (31-77)||(30007814-30007860)
[»] chr3 (3 HSPs)
chr3 (24-75)||(33695855-33695906)
chr3 (1-77)||(13993366-13993442)
chr3 (24-60)||(47846577-47846613)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 33928554 - 33928321
Alignment:
Q  1 gccatagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaagaaaaagctcaacaaatttcatgcagctttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33928554 gccatagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaagaaaaagctcaacaaatttcatgcagctttag 33928455  T
Q  101 atccatcaaactcaacaacagcttatctatccaagagttttagtgacagaagtttagatgttagcaacaatcatacttcatctcttaagattaatactca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33928454 atccatcaaactcaacaacagcttatctatccaagagttttagtgacagaagtttagatgttagcaacaatcatacttcatctcttaagattaatactca 33928355  T
Q  201 aaattctcaccaatcttcttcttcaacctatgct 234  Q
    ||||||||| ||||||||||||||||||||||||    
T  33928354 aaattctcatcaatcttcttcttcaacctatgct 33928321  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 2461523 - 2461575
Alignment:
Q  4 atagcttcataccttccacaaagaacagataatgatataaagaattattggaa 56  Q
    ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||    
T  2461523 atagcatcataccttccacaaagaacagataatgacataaaaaactattggaa 2461575  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 48892520 - 48892471
Alignment:
Q  28 acagataatgatataaagaattattggaacacacatctaaagaaaaagct 77  Q
    ||||||||||| ||||||||||| ||||||||||||||||  ||||||||    
T  48892520 acagataatgagataaagaattactggaacacacatctaagtaaaaagct 48892471  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 2950124 - 2950172
Alignment:
Q  25 agaacagataatgatataaagaattattggaacacacatctaaagaaaa 73  Q
    |||||||||||||| || ||||| ||||||||||||||||| |||||||    
T  2950124 agaacagataatgaaatcaagaactattggaacacacatcttaagaaaa 2950172  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 3616965 - 3617050
Alignment:
Q  1 gccatagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaagaaaaagctcaacaaatt 86  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||| || |||||||||||  || | ||||||||||| || |||||    
T  3616965 gccatagctgcataccttccacaaagaacagacaatgacataaaaaactattggaacacttatttgaagaaaaagctgaaaaaatt 3617050  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 3911863 - 3911911
Alignment:
Q  25 agaacagataatgatataaagaattattggaacacacatctaaagaaaa 73  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  3911863 agaacagataatgagataaagaattattggaacacacatcttaagaaaa 3911911  T

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Target: scaffold0489 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 10322 - 10256
Alignment:
Q  4 atagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaaga 70  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||| ||||||    
T  10322 atagcttcatatcttccacaaaggacagacaatgacataaaaaattattggaatacacatttaaaga 10256  T

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Target: scaffold0140 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 10706 - 10772
Alignment:
Q  4 atagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaaga 70  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||| ||||||    
T  10706 atagcttcatatcttccacaaaggacagacaatgacataaaaaattattggaatacacatttaaaga 10772  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 1318497 - 1318448
Alignment:
Q  28 acagataatgatataaagaattattggaacacacatctaaagaaaaagct 77  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  1318497 acagataatgagataaagaatttttggaacacacatttaaagaaaaagct 1318448  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 1283900 - 1283944
Alignment:
Q  31 gataatgatataaagaattattggaacacacatctaaagaaaaag 75  Q
    |||||||| |||||||||| ||||||||| ||| |||||||||||    
T  1283900 gataatgaaataaagaatttttggaacacccatttaaagaaaaag 1283944  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 27808573 - 27808608
Alignment:
Q  24 aagaacagataatgatataaagaattattggaacac 59  Q
    ||||||||||||||| ||||||||||||||||||||    
T  27808573 aagaacagataatgagataaagaattattggaacac 27808608  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 30007814 - 30007860
Alignment:
Q  31 gataatgatataaagaattattggaacacacatctaaagaaaaagct 77  Q
    |||||||| |||||||||| ||||||||| ||| |||||||||||||    
T  30007814 gataatgaaataaagaatttttggaacactcatttaaagaaaaagct 30007860  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 33695855 - 33695906
Alignment:
Q  24 aagaacagataatgatataaagaattattggaacacacatctaaagaaaaag 75  Q
    ||||||||||||||| ||||||||||  |||||||| ||||| |||||||||    
T  33695855 aagaacagataatgagataaagaatttctggaacactcatctgaagaaaaag 33695906  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13993442 - 13993366
Alignment:
Q  1 gccatagcttcataccttccacaaagaacagataatgatataaagaattattggaacacacatctaaagaaaaagct 77  Q
    ||||||||||| || |||||| |||||||||| ||||| || || || |||||||| |||||| | | |||||||||    
T  13993442 gccatagcttcctatcttccagaaagaacagacaatgacatcaaaaactattggaatacacatttgaggaaaaagct 13993366  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 47846613 - 47846577
Alignment:
Q  24 aagaacagataatgatataaagaattattggaacaca 60  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  47846613 aagaaccgataatgatataaagaactattggaacaca 47846577  T

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