View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_25 (Length: 241)
Name: NF15531_low_25
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25421958 - 25421733
Alignment:
| Q |
1 |
tgatatatgctattggaatgagaggcaaaactggagggcaaaatagtcattttaagcaattatcctggaatacactttaatggaacatgttgagtaataa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25421958 |
tgatatatgctattggaatgagaggcaaaaatggagggcaaaatagtcattttaagcaattatcctggaatacactttaatggaacatgttgagtaataa |
25421859 |
T |
|
| Q |
101 |
tgtataaaatggaatttctgtattataagctccacataaaggctcattac-aaacatttagaatgtcagctctaataccttactaatcaagaaaggtttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25421858 |
tgtataaaatggaatttctgtattataagctccatataaaggctcattgcaaaacatttagaatgccagctctaataccttactaatcaagaaaggtttc |
25421759 |
T |
|
| Q |
200 |
aaagcaatttgtaggatttccttctt |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
25421758 |
aaagcaatttgtaggatttccttctt |
25421733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 1719695 - 1719551
Alignment:
| Q |
58 |
aattatcctggaatacactttaatggaacatgttgagtaataatgtataaaatggaatttctgtattat----aagctccacataaaggctcattac-aa |
152 |
Q |
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||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||| ||||||||||||||| || |
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| T |
1719695 |
aattatcttggaatacactttaatggaacatgtagcgtaataatgtataaaatggaatttctgtcatagtaagaagctccatataaaggctcattactaa |
1719596 |
T |
|
| Q |
153 |
acatttagaatgtcagctctaataccttactaatcaagaaaggtt |
197 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1719595 |
acatttagaatgtcagctctaatatcttactaatcaagaaaggtt |
1719551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 32304182 - 32304125
Alignment:
| Q |
59 |
attatcctggaatacactttaatggaacatgttgagtaataatgtataaaatggaatt |
116 |
Q |
| |
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||||| || |||||||||||||||||||| || ||||||| |||| |||||||||||| |
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| T |
32304182 |
attattctagaatacactttaatggaacacgtagagtaatcatgtttaaaatggaatt |
32304125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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