View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15531_low_27 (Length: 237)
Name: NF15531_low_27
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9164437 - 9164656
Alignment:
| Q |
1 |
ttcaacttcttaggtggtacactaatagatgactttgcttcctcattttcttttcttttcccctttgaagtaggtgttccacgagcaggtcctgttgctg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164437 |
ttcaacttcttagttggtacactaatagatgactttgcttcctcattttcttttcttttcccctttgaagtaggtgttccacgagcaggtcctgttgctg |
9164536 |
T |
|
| Q |
101 |
taggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaacctggacaaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164537 |
taggttttgaaggactgctgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaacctggacaaa |
9164636 |
T |
|
| Q |
201 |
taaaattgatccgctgatta |
220 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
9164637 |
taaaattgatccactgatta |
9164656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9151613 - 9151841
Alignment:
| Q |
1 |
ttcaacttcttaggtggtacactaatagatgactttgcttcctcattttcttttcttttccccttt---------gaagtaggtgttccacgagcaggtc |
91 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
9151613 |
ttcaccttcttaggtggtacactaatagatggctttgcttcctcgtttgcttttcttttcgcctttgaagactttgaagtaggtgttccacgagcaggtc |
9151712 |
T |
|
| Q |
92 |
ctgttgctgtaggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaac |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||| |||| |
|
|
| T |
9151713 |
ctgttgctgtaggttttgaaggactgttatcaacaggttcttccttaggttccttctgcttagtagcagtcacagcaggaacaccgtcttcgtcgtcaat |
9151812 |
T |
|
| Q |
192 |
ctggacaaataaaattgatccgctgatta |
220 |
Q |
| |
|
|| || ||||||||||||||||||||||| |
|
|
| T |
9151813 |
ctagaaaaataaaattgatccgctgatta |
9151841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 9190840 - 9190713
Alignment:
| Q |
33 |
ctttgcttcctcattttcttttcttttcccctttgaagtaggtgttccacgagcaggtcctgttgctgtaggttttgaaggactgttgtcaataggttct |
132 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| | |||| ||||||| |
|
|
| T |
9190840 |
ctttgcttccttgtttgcttttcttttcgcctttgaagcaggtgttccacgagtaggtcatgttgccgtaggttttgaaggactactttcaacaggttct |
9190741 |
T |
|
| Q |
133 |
tccttaggttccttctgctttgtagcag |
160 |
Q |
| |
|
|| |||||||||||||||||| |||||| |
|
|
| T |
9190740 |
tctttaggttccttctgctttctagcag |
9190713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University