View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15531_low_28 (Length: 225)

Name: NF15531_low_28
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15531_low_28
NF15531_low_28
[»] chr1 (5 HSPs)
chr1 (49-205)||(3804070-3804226)
chr1 (61-154)||(3801764-3801859)
chr1 (175-225)||(50668583-50668633)
chr1 (175-225)||(3802605-3802655)
chr1 (104-154)||(50668037-50668087)
[»] chr4 (10 HSPs)
chr4 (49-154)||(46303846-46303952)
chr4 (96-154)||(46015351-46015409)
chr4 (61-145)||(46027907-46027991)
chr4 (61-210)||(46015862-46016024)
chr4 (63-147)||(46428226-46428310)
chr4 (96-225)||(46020583-46020724)
chr4 (175-217)||(41074991-41075033)
chr4 (92-130)||(46021252-46021290)
chr4 (96-130)||(46246316-46246350)
chr4 (176-225)||(46021346-46021395)
[»] chr8 (2 HSPs)
chr8 (98-172)||(4525329-4525403)
chr8 (109-172)||(4522956-4523021)
[»] scaffold0384 (2 HSPs)
scaffold0384 (183-225)||(5539-5581)
scaffold0384 (175-225)||(4138-4188)
[»] scaffold0079 (1 HSPs)
scaffold0079 (175-225)||(6699-6749)
[»] chr7 (1 HSPs)
chr7 (92-154)||(444147-444209)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 49 - 205
Target Start/End: Complemental strand, 3804226 - 3804070
Alignment:
Q  49 atgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgattttaaaacc 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3804226 atgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaaacc 3804127  T
Q  149 atgtgataacaattctttttgcttacaaaatgcaagctcttgattgagtgttaatat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3804126 atgtgataacaattctttttgcttacaaaatgcaagctcttgattgagtgttaatat 3804070  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 3801859 - 3801764
Alignment:
Q  61 tgtattaatatgttctttgctatgaagttagtttgggtt--aacatgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtga 154  Q
    |||||||||| |||||||||  |||| |||||||||| |  |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||    
T  3801859 tgtattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtga 3801764  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 50668583 - 50668633
Alignment:
Q  175 aaaatgcaagctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
    |||||||||||||||||| |||||||||||| |||| |||||| |||||||    
T  50668583 aaaatgcaagctcttgatcgagtgttaatatgcacataagttggttatgtt 50668633  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 3802655 - 3802605
Alignment:
Q  175 aaaatgcaagctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
    ||||||||| ||||||||||||||||||||| |||| |||| | |||||||    
T  3802655 aaaatgcaacctcttgattgagtgttaatatgcacataagtgggttatgtt 3802605  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 50668037 - 50668087
Alignment:
Q  104 tgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtga 154  Q
    |||||||| ||||| ||| |||||||||||||||| |||| ||||||||||    
T  50668037 tgcacttcgtccatatgtcatgatttaaattttgactttagaaccatgtga 50668087  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 46303952 - 46303846
Alignment:
Q  49 atgttgtgatgttgtattaatatgttctttgctatgaagttagtttggg-ttaacatgcacttcatccatctgttatgatttaaattttgattttaaaac 147  Q
    |||||||||||| ||||||| |||||||||||| |||| |||| ||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  46303952 atgttgtgatgtcgtattaacatgttctttgctgtgaaattagcttggggttaacatgcatttcatccatctgttatgatttagattttgactttaaaac 46303853  T
Q  148 catgtga 154  Q
     ||||||    
T  46303852 tatgtga 46303846  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 46015351 - 46015409
Alignment:
Q  96 ggttaacatgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtga 154  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||    
T  46015351 ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtga 46015409  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 46027907 - 46027991
Alignment:
Q  61 tgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgattttaaa 145  Q
    |||||| |||||||||||||  | || ||| ||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  46027907 tgtattgatatgttctttgcagttaaattaatttaggttaacatgtacttcgtccatctgttatgatttaaattttgactttaaa 46027991  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 210
Target Start/End: Original strand, 46015862 - 46016024
Alignment:
Q  61 tgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtgataa--c 158  Q
    |||||| |||||||||||||  | |  ||| |||||||||||||| ||||| |||||||||||||||||| || |||| |||||||| ||||||  |  |    
T  46015862 tgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatac 46015961  T
Q  159 aattctttttgcttac-----------aaaatgcaagctcttgattgagtgttaatatacaca 210  Q
    |||| ||||||||| |           |||||||||| |||||||||||||||||||||||||    
T  46015962 aattatttttgctttcctgtttttatgaaaatgcaagttcttgattgagtgttaatatacaca 46016024  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 46428226 - 46428310
Alignment:
Q  63 tattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgattttaaaac 147  Q
    |||| |||||||||||||  | || ||| |||||||||||||| ||||| |||| ||||||||||||| ||||||| ||||||||    
T  46428226 tattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacattttgactttaaaac 46428310  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 46020583 - 46020724
Alignment:
Q  96 ggttaacatgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtga--taacaattctttttgcttac----------aaaatgcaa 183  Q
    ||||||||||||||| |||||||||||||||||||  || ||| |||||||||||||||    ||||||||||||| || |          |||||||||    
T  46020583 ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttccttttttatgaaaatgcaa 46020682  T
Q  184 gctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
     ||||||||||||||||||||| |||| || ||| |||||||    
T  46020683 cctcttgattgagtgttaatatgcacataatttggttatgtt 46020724  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 41074991 - 41075033
Alignment:
Q  175 aaaatgcaagctcttgattgagtgttaatatacacacaagttg 217  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||    
T  41074991 aaaatgctagctcttgattgagtgttaatatgcacataagttg 41075033  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 46021252 - 46021290
Alignment:
Q  92 tttgggttaacatgcacttcatccatctgttatgattta 130  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  46021252 tttgagttaacatgcactccatccatctgttatgattta 46021290  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 46246350 - 46246316
Alignment:
Q  96 ggttaacatgcacttcatccatctgttatgattta 130  Q
    ||||||||||||||| |||||||||||||||||||    
T  46246350 ggttaacatgcacttaatccatctgttatgattta 46246316  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 46021346 - 46021395
Alignment:
Q  176 aaatgcaagctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
    |||||||| ||||||||||| ||||||||| |||| |||||| |||||||    
T  46021346 aaatgcaacctcttgattgaatgttaatatgcacataagttggttatgtt 46021395  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 4525403 - 4525329
Alignment:
Q  98 ttaacatgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtgataacaattctttttgctt 172  Q
    |||| ||||||||||||||||||||||||| ||  |||||| |||||||||||||||  ||||||||||||||||    
T  4525403 ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtgaagacaattctttttgctt 4525329  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 4523021 - 4522956
Alignment:
Q  109 ttcatccatctgttatgatttaaattttgattttaaaaccatgtga--taacaattctttttgctt 172  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||    ||||||||||||||||    
T  4523021 ttcattcatctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctt 4522956  T

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Target: scaffold0384 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 5581 - 5539
Alignment:
Q  183 agctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  5581 agctcttgattgagtgttaatatgcacacaagttggttatgtt 5539  T

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Target: scaffold0384; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 4188 - 4138
Alignment:
Q  175 aaaatgcaagctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
    ||||||| |||||| |||||||||||||||| |||| |||||| |||||||    
T  4188 aaaatgctagctctagattgagtgttaatatgcacataagttggttatgtt 4138  T

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Target: scaffold0079 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 6749 - 6699
Alignment:
Q  175 aaaatgcaagctcttgattgagtgttaatatacacacaagttgtttatgtt 225  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| |||||||    
T  6749 aaaatgctagctcttgattgagtgttaatatgcacataagttggttatgtt 6699  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 444147 - 444209
Alignment:
Q  92 tttgggttaacatgcacttcatccatctgttatgatttaaattttgattttaaaaccatgtga 154  Q
    ||||| ||||||||||||||||||||||  |  |||||| ||||||| |||| ||||||||||    
T  444147 tttggtttaacatgcacttcatccatctaattcgatttagattttgactttagaaccatgtga 444209  T

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