View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15531_low_33 (Length: 218)

Name: NF15531_low_33
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15531_low_33
NF15531_low_33
[»] chr4 (26 HSPs)
chr4 (6-206)||(26314373-26314573)
chr4 (1-105)||(17865257-17865361)
chr4 (1-105)||(4712459-4712562)
chr4 (1-102)||(32592744-32592845)
chr4 (1-106)||(13492881-13492986)
chr4 (1-105)||(37815622-37815727)
chr4 (1-107)||(16959759-16959866)
chr4 (8-105)||(17107720-17107816)
chr4 (45-99)||(13683322-13683376)
chr4 (47-105)||(22487545-22487603)
chr4 (1-111)||(13682996-13683106)
chr4 (3-105)||(39385180-39385282)
chr4 (45-105)||(16491971-16492031)
chr4 (17-102)||(42239370-42239455)
chr4 (1-114)||(43749936-43750049)
chr4 (1-105)||(989356-989460)
chr4 (4-115)||(11021957-11022068)
chr4 (4-79)||(12792596-12792671)
chr4 (1-102)||(989078-989178)
chr4 (1-106)||(46081423-46081527)
chr4 (55-115)||(46481252-46481312)
chr4 (1-105)||(37815339-37815443)
chr4 (1-32)||(43750228-43750259)
chr4 (55-105)||(2184422-2184472)
chr4 (55-104)||(43750280-43750329)
chr4 (1-33)||(39385442-39385474)
[»] scaffold0817 (2 HSPs)
scaffold0817 (1-105)||(4263-4367)
scaffold0817 (1-105)||(3981-4085)
[»] chr6 (21 HSPs)
chr6 (1-105)||(17238315-17238419)
chr6 (1-107)||(8926470-8926576)
chr6 (1-107)||(8936727-8936833)
chr6 (1-105)||(30608864-30608968)
chr6 (1-105)||(3485055-3485159)
chr6 (1-104)||(3345019-3345122)
chr6 (4-107)||(19661346-19661448)
chr6 (4-105)||(26272264-26272365)
chr6 (1-105)||(5404851-5404955)
chr6 (1-105)||(5409176-5409280)
chr6 (4-110)||(9571680-9571786)
chr6 (1-105)||(28853766-28853870)
chr6 (1-102)||(5924108-5924210)
chr6 (1-112)||(33783387-33783499)
chr6 (45-114)||(17238021-17238090)
chr6 (1-107)||(30609147-30609253)
chr6 (1-106)||(16525474-16525579)
chr6 (50-105)||(31717476-31717532)
chr6 (1-103)||(5140690-5140792)
chr6 (1-34)||(16525262-16525295)
chr6 (1-34)||(31717456-31717489)
[»] chr3 (21 HSPs)
chr3 (1-105)||(46962580-46962684)
chr3 (1-105)||(49500124-49500228)
chr3 (1-105)||(50645753-50645857)
chr3 (1-104)||(38807819-38807922)
chr3 (1-103)||(29838294-29838396)
chr3 (1-105)||(17109849-17109953)
chr3 (1-105)||(32315374-32315478)
chr3 (8-115)||(14545823-14545930)
chr3 (4-105)||(55092491-55092592)
chr3 (1-105)||(42093393-42093497)
chr3 (1-111)||(52835826-52835936)
chr3 (1-99)||(26582617-26582714)
chr3 (1-113)||(27284960-27285072)
chr3 (45-104)||(32315700-32315759)
chr3 (11-105)||(27934742-27934836)
chr3 (1-114)||(49499832-49499945)
chr3 (1-107)||(52835541-52835647)
chr3 (1-105)||(27934449-27934553)
chr3 (55-103)||(17109747-17109795)
chr3 (1-33)||(27285250-27285282)
chr3 (1-114)||(33162601-33162714)
[»] chr2 (26 HSPs)
chr2 (1-105)||(18369011-18369115)
chr2 (1-102)||(41593952-41594053)
chr2 (1-105)||(28921474-28921578)
chr2 (1-104)||(29683455-29683558)
chr2 (4-105)||(2395441-2395542)
chr2 (1-102)||(4171806-4171907)
chr2 (1-102)||(14379114-14379215)
chr2 (1-104)||(10748493-10748596)
chr2 (1-104)||(41594232-41594335)
chr2 (45-105)||(30432594-30432654)
chr2 (1-105)||(12806830-12806934)
chr2 (1-105)||(33940679-33940783)
chr2 (1-103)||(42705233-42705335)
chr2 (1-103)||(3948364-3948466)
chr2 (45-106)||(17457715-17457776)
chr2 (13-105)||(30432888-30432980)
chr2 (1-103)||(7877323-7877426)
chr2 (1-107)||(3371583-3371689)
chr2 (4-102)||(13572755-13572853)
chr2 (1-105)||(19204873-19204978)
chr2 (1-105)||(29683174-29683278)
chr2 (50-107)||(6879998-6880055)
chr2 (4-117)||(28921180-28921292)
chr2 (1-105)||(37609236-37609340)
chr2 (4-34)||(6880042-6880072)
chr2 (1-33)||(32521756-32521788)
[»] chr1 (24 HSPs)
chr1 (1-104)||(39027480-39027583)
chr1 (4-105)||(20061796-20061897)
chr1 (1-105)||(50625047-50625149)
chr1 (1-105)||(28031928-28032032)
chr1 (1-105)||(42155031-42155134)
chr1 (1-104)||(43191655-43191758)
chr1 (1-114)||(50096414-50096527)
chr1 (1-105)||(26244830-26244934)
chr1 (1-104)||(50096132-50096235)
chr1 (4-105)||(37172246-37172347)
chr1 (4-105)||(26244547-26244648)
chr1 (57-105)||(14602345-14602393)
chr1 (1-105)||(33838-33942)
chr1 (1-105)||(20062079-20062183)
chr1 (1-105)||(33619177-33619281)
chr1 (47-102)||(47829287-47829342)
chr1 (61-106)||(51999450-51999495)
chr1 (1-74)||(10914055-10914128)
chr1 (1-105)||(12322090-12322194)
chr1 (1-105)||(18963607-18963711)
chr1 (45-104)||(12322418-12322478)
chr1 (1-33)||(14602291-14602323)
chr1 (45-105)||(39288150-39288210)
chr1 (1-33)||(47829243-47829275)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-105)||(43275-43379)
[»] chr7 (21 HSPs)
chr7 (4-112)||(42517151-42517259)
chr7 (1-107)||(24352-24458)
chr7 (1-105)||(19157974-19158078)
chr7 (1-105)||(20757373-20757477)
chr7 (1-104)||(22364656-22364756)
chr7 (1-105)||(40729344-40729448)
chr7 (1-105)||(44483507-44483611)
chr7 (1-113)||(34595600-34595712)
chr7 (1-103)||(44219294-44219396)
chr7 (1-105)||(35026725-35026828)
chr7 (45-103)||(13426325-13426383)
chr7 (47-104)||(31579440-31579497)
chr7 (47-110)||(830006-830069)
chr7 (47-110)||(1195186-1195249)
chr7 (13-104)||(42516866-42516957)
chr7 (1-106)||(13426573-13426678)
chr7 (45-104)||(19476720-19476780)
chr7 (45-106)||(35026442-35026503)
chr7 (1-33)||(829962-829994)
chr7 (1-33)||(1195142-1195174)
chr7 (1-33)||(22954410-22954442)
[»] chr5 (18 HSPs)
chr5 (1-105)||(22394122-22394226)
chr5 (1-105)||(24490842-24490945)
chr5 (1-106)||(3598694-3598799)
chr5 (1-114)||(4122568-4122679)
chr5 (5-107)||(43196897-43196999)
chr5 (1-105)||(6497473-6497577)
chr5 (4-105)||(6542257-6542358)
chr5 (9-102)||(14868961-14869054)
chr5 (1-113)||(3598403-3598515)
chr5 (4-102)||(25329098-25329196)
chr5 (1-107)||(10461341-10461447)
chr5 (1-105)||(15969711-15969810)
chr5 (1-105)||(24491124-24491228)
chr5 (57-106)||(7133465-7133514)
chr5 (50-105)||(5933123-5933178)
chr5 (1-105)||(10461626-10461730)
chr5 (55-102)||(41137475-41137522)
chr5 (1-102)||(18786262-18786362)
[»] chr8 (12 HSPs)
chr8 (1-106)||(3273001-3273106)
chr8 (4-105)||(6943941-6944042)
chr8 (1-105)||(31402910-31403015)
chr8 (1-105)||(18764283-18764387)
chr8 (1-105)||(26479324-26479427)
chr8 (6-105)||(2835379-2835478)
chr8 (1-104)||(13154520-13154623)
chr8 (1-103)||(9180326-9180428)
chr8 (1-107)||(13405729-13405835)
chr8 (46-102)||(31186670-31186726)
chr8 (4-115)||(13154227-13154338)
chr8 (1-34)||(31685952-31685985)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-105)||(36765-36867)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-106)||(8538-8644)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-107)||(118313-118418)
[»] scaffold0147 (1 HSPs)
scaffold0147 (45-105)||(25461-25521)
[»] scaffold0006 (2 HSPs)
scaffold0006 (5-105)||(212410-212509)
scaffold0006 (1-105)||(212693-212797)
[»] scaffold0028 (1 HSPs)
scaffold0028 (3-107)||(74197-74300)
[»] scaffold0045 (1 HSPs)
scaffold0045 (46-103)||(43994-44051)
[»] scaffold0126 (1 HSPs)
scaffold0126 (45-105)||(36318-36378)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 26314573 - 26314373
Alignment:
Q  6 aattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    |||||||||||||||||||||||||||||       |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  26314573 aattttttatatttgcagggactaaaaccaaaaaaatagttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcacatttaagcc 26314474  T
Q  106 aataaaaaatgtaggaatacagtggtgtcgtatatgtgtttattattttgtgtcacgttatcatagctcttatgaaggggcctatgtgctcaagtttttc 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26314473 aataaaaaatgtaggtatacagtggtgtcgtatatgtgtttattattttgtgtcatgttatcatagctcttatgaaggggcctatgtgctcaagtttttc 26314374  T
Q  206 a 206  Q
    |    
T  26314373 a 26314373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17865257 - 17865361
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  17865257 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 17865356  T
Q  101 aagcc 105  Q
    |||||    
T  17865357 aagcc 17865361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4712459 - 4712562
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  4712459 aaccaaattttttatatttgcagggactaaaaccaaaaaa-tatttttatagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 4712557  T
Q  101 aagcc 105  Q
    |||||    
T  4712558 aagcc 4712562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 32592845 - 32592744
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| ||||||||||||||||||||||||||       || ||||||| | |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  32592845 aaccaaaatttttatatttgcagggactaaaaccaaaaaaatatttttacaaggactaaaaccaaaatgtcaaatatttgcagggactattttcacattt 32592746  T
Q  101 aa 102  Q
    ||    
T  32592745 aa 32592744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 13492986 - 13492881
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||| |||||| ||||||||||||||||||||       || ||||| ||| |||||||||||||  |||||||||| ||||||||||||||| ||||    
T  13492986 aaccaatttttttttatttgcagggactaaaaccaaaaaaatatttttagagggactaaaaccaaaaagtcagatatttgcagggactattttcatattt 13492887  T
Q  101 aagcca 106  Q
    ||||||    
T  13492886 aagcca 13492881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 37815622 - 37815727
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||||||||||||||||||||||||||||        || ||||||||| |||||||||||||| |||||||||| | ||||| ||||||| |||    
T  37815622 aaccaaattttttatatttgcagggactaaaaccaaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgctgggacaattttcatatt 37815721  T
Q  100 taagcc 105  Q
    ||||||    
T  37815722 taagcc 37815727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 16959866 - 16959759
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    |||||||||||||||||||||| |||||||||||        || ||||| ||| |||||||| ||||| |||||||||| ||||||||||||||| |||    
T  16959866 aaccaaattttttatatttgcatggactaaaaccaaaaaaaatatttttatagggactaaaactaaaatgtcagatatttgcagggactattttcatatt 16959767  T
Q  100 taagccaa 107  Q
    ||||||||    
T  16959766 taagccaa 16959759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 17107720 - 17107816
Alignment:
Q  8 ttttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||||||||||||||||||| |       || ||||||| | |||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  17107720 ttttttatatttgcagggactaaaatcaaaaaaatatttttacatg-actaaaaccaaaatgtcagatatttgcagggactattttcatatttaagcc 17107816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 13683322 - 13683376
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||    
T  13683322 ttttacagggactaaaatcaaaatgtcagatatttgcagggactattttcacatt 13683376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 22487545 - 22487603
Alignment:
Q  47 ttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||| |||||||||||||| ||| |||||| ||||||||||||||| |||||||||    
T  22487545 ttacagggactaaaaccaaaatgtcaaatatttgcagggactattttcatatttaagcc 22487603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13683106 - 13682996
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||| ||||||||||||||       || ||||| ||| |||||||||||||| |||||||||| ||||||  |||| || ||||    
T  13683106 aaccaaatattctatatttacagggactaaaaccaaaaaaatatttttatagggactaaaaccaaaatgtcagatatttgcagggatcatttccatattt 13683007  T
Q  101 aagccaataaa 111  Q
    ||||| |||||    
T  13683006 aagcctataaa 13682996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 39385282 - 39385180
Alignment:
Q  3 ccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    ||||||||||||||||||||||||||||||||       || ||||||||  | |||| ||||||| ||| ||||||  |||||| ||||||| ||||||    
T  39385282 ccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagagattaaatccaaaatgtcatatatttggagggacgattttcatatttaa 39385183  T
Q  103 gcc 105  Q
    |||    
T  39385182 gcc 39385180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 16491971 - 16492031
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||| | |||||||||||| |||||||||| ||| ||||||||||| |||||||||    
T  16491971 ttttacagggattaaaaccaaaatgtcagatatttgcagtgactattttcatatttaagcc 16492031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 42239370 - 42239455
Alignment:
Q  17 tttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    ||||||||||||||||||       || ||||||||  |||||||| ||||| |||||||||| ||||||||||||||| ||||||    
T  42239370 tttgcagggactaaaaccaaaaaaatatttttacagagactaaaactaaaatgtcagatatttgcagggactattttcatatttaa 42239455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43750049 - 43749936
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| ||||||| ||||| | ||||||||| ||||||| |||| || ||||    
T  43750049 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttataggaactaaaatcaaaacaccagatatttgcagggaccatttccatattt 43749950  T
Q  101 aagccaataaaaaa 114  Q
    ||||| | ||||||    
T  43749949 aagcctaaaaaaaa 43749936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 989356 - 989460
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||| ||||||||||||||||       || ||||| ||| |||||||||||||  |||||||||| ||||||| |||| || ||||    
T  989356 aaccaaatattctatatctgcagggactaaaaccaaaaaaatatttttatagggactaaaaccaaaacgtcagatatttgcagggaccatttccatattt 989455  T
Q  101 aagcc 105  Q
    |||||    
T  989456 aagcc 989460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 11021957 - 11022068
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||||||||||| | |||||||||||       || ||||||| | | |||||| |||||||||||||| | ||||||| ||||||| ||||||     
T  11021957 caaattttttatatttgtaaggactaaaaccaaaaaaatatttttacatggattaaaacgaaaatatcagatatgtacagggaccattttcatatttaaa 11022056  T
Q  104 ccaataaaaaat 115  Q
    || | |||||||    
T  11022057 cctaaaaaaaat 11022068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 12792671 - 12792596
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatattt 79  Q
    ||||||||||||||||||||||||||||| |       || ||||||||| ||||||||||||||  |||||||||    
T  12792671 caaattttttatatttgcagggactaaaatcaaaaaaatatttttacagggactaaaaccaaaatgacagatattt 12792596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 989178 - 989078
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatattt-ccagggactattttcacatt 99  Q
    |||||| |||||||||||| |||| |||||||||       || ||||||||| |||||||||||||| ||||||||||  ||||||||||||||| |||    
T  989178 aaccaatttttttatatttacagg-actaaaaccaaaaaaatatttttacagg-actaaaaccaaaatgtcagatatttggcagggactattttcatatt 989081  T
Q  100 taa 102  Q
    |||    
T  989080 taa 989078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 46081527 - 46081423
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| |||| |||||||||||||| ||||||       || ||||| ||| |||||||| ||||| ||||||||||  |||||||||||||  ||||    
T  46081527 aaccaaaattttcatatttgcagggac-aaaaccaaaaaaatatttttatagggactaaaacaaaaatgtcagatatttggagggactattttctgattt 46081429  T
Q  101 aagcca 106  Q
    ||||||    
T  46081428 aagcca 46081423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 46481252 - 46481312
Alignment:
Q  55 actaaaaccaaaatatcagatatttccagggactattttcacatttaagccaataaaaaat 115  Q
    |||||| ||||||| | |||||||| ||||||||||||||| ||||||||| |||| ||||    
T  46481252 actaaatccaaaatgttagatatttgcagggactattttcatatttaagcctataataaat 46481312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 37815443 - 37815339
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||||| |||||||||||       || ||||| ||| |||||| |||||||  ||||||||| ||||||| |||| || ||||    
T  37815443 aaccaaatattctatatttgcatggactaaaaccaaaaaaatatttttatagggactaaatccaaaatgccagatatttacagggaccatttccatattt 37815344  T
Q  101 aagcc 105  Q
    |||||    
T  37815343 aagcc 37815339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 43750228 - 43750259
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  43750228 aaccaaattttttatatttgcagggactaaaa 43750259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 2184472 - 2184422
Alignment:
Q  55 actaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    |||||||||||||| |||||||||| ||| | ||||||||| |||||||||    
T  2184472 actaaaaccaaaatgtcagatatttgcagaggctattttcatatttaagcc 2184422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 43750280 - 43750329
Alignment:
Q  55 actaaaaccaaaatatcagatatttccagggactattttcacatttaagc 104  Q
    ||||||||||||||  | ||||||| ||||||||||||||| ||||||||    
T  43750280 actaaaaccaaaatgacggatatttgcagggactattttcatatttaagc 43750329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39385442 - 39385474
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||||| ||||||||||||||||||||||||    
T  39385442 aaccaaatattttatatttgcagggactaaaac 39385474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0817
Description:

Target: scaffold0817; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4263 - 4367
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  4263 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 4362  T
Q  101 aagcc 105  Q
    |||||    
T  4363 aagcc 4367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0817; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 4085 - 3981
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| ||||||| ||||||||||||||       || ||||| ||| |||||||||||||   ||||||||| ||||||| |||| || ||||    
T  4085 aaccaaattttctatatttacagggactaaaaccaaaaaaatatttttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatattt 3986  T
Q  101 aagcc 105  Q
    |||||    
T  3985 aagcc 3981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 17238315 - 17238419
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| ||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  17238315 aaccaaattttctatatttgcagggactaaaaccaaaaaattatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcacattt 17238414  T
Q  101 aagcc 105  Q
    |||||    
T  17238415 aagcc 17238419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8926470 - 8926576
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| | ||||||||||||| ||||    
T  8926470 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttaccgggactattttcatattt 8926569  T
Q  101 aagccaa 107  Q
    |||||||    
T  8926570 aagccaa 8926576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 8936727 - 8936833
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| | ||||||||||||| ||||    
T  8936727 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttaccgggactattttcatattt 8936826  T
Q  101 aagccaa 107  Q
    |||||||    
T  8936827 aagccaa 8936833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30608968 - 30608864
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||| ||||||||| |||||| ||||||||||||||| ||||    
T  30608968 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaactaaaatatcaaatatttgcagggactattttcatattt 30608869  T
Q  101 aagcc 105  Q
    |||||    
T  30608868 aagcc 30608864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3485055 - 3485159
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||| |       || |||| |||| |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  3485055 aaccaaattttttatatttgcagggactaaaatcaaaaaaatatttttgcagggactaaaaccaaaatgtcacatatttgcagggactattttcacattt 3485154  T
Q  101 aagcc 105  Q
    |||||    
T  3485155 aagcc 3485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3345122 - 3345019
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||||        || ||||||| | ||||||||||||||||||||||| | ||||||||||||||| ||||    
T  3345122 aaccaaattttttatatttgcagggactaaaacgaaaaaaatatttttacaaggactaaaaccaaaatatcagatatctgcagggactattttcatattt 3345023  T
Q  101 aagc 104  Q
    ||||    
T  3345022 aagc 3345019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 19661448 - 19661346
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    |||||||||||||||||||||||||||||||       || ||||||||  |||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  19661448 caaattttttatatttgcagggactaaaaccaaaaaa-tatttttacagaaactaaaaccaaaatgtcagatatttgcagggactattttcatatttaag 19661350  T
Q  104 ccaa 107  Q
    ||||    
T  19661349 ccaa 19661346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 26272264 - 26272365
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||||||||||||||| |||||||||       || ||||| ||| |||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  26272264 caaattttttatatttgcaggaactaaaaccaaaaatatatttttatagggactaaaaccaaaatgtcagatatttacagggactattttcatatttaag 26272363  T
Q  104 cc 105  Q
    ||    
T  26272364 cc 26272365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5404851 - 5404955
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||| |       || ||||| ||  |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  5404851 aaccaaattttttatatttgcagggactaaaatcaaaaaaatatttttatagagactaaaaccaaaatgtcagatatttgcagggactattttcatattt 5404950  T
Q  101 aagcc 105  Q
    |||||    
T  5404951 aagcc 5404955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5409176 - 5409280
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||| |       || ||||| ||  |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  5409176 aaccaaattttttatatttgcagggactaaaatcaaaaaaatatttttatagagactaaaaccaaaatgtcagatatttgcagggactattttcatattt 5409275  T
Q  101 aagcc 105  Q
    |||||    
T  5409276 aagcc 5409280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 9571680 - 9571786
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||| |||||||||||||||||||||       || ||||||||| |||||||| ||||| |||||||||| || |||||||||||| |||||||    
T  9571680 caaatttttcatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaactaaaatgtcagatatttgcaaggactattttcatatttaag 9571779  T
Q  104 ccaataa 110  Q
    || ||||    
T  9571780 cctataa 9571786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28853766 - 28853870
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||| |||||||||       || ||||| ||| |||||||||||||| ||||||||||  ||||||||||||||  |||    
T  28853766 aaccaaattttttatatttgcaggaactaaaaccaaaaaaatatttttatagggactaaaaccaaaatgtcagatatttgtagggactattttcatgttt 28853865  T
Q  101 aagcc 105  Q
    |||||    
T  28853866 aagcc 28853870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5924108 - 5924210
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    |||||||||||||||||||| ||||||||||||         || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||    
T  5924108 aaccaaattttttatatttgtagggactaaaacataaaaaaatatttttacaggaactaaaaccaaaatgtcagatatttgcagggactattttcatatt 5924207  T
Q  100 taa 102  Q
    |||    
T  5924208 taa 5924210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33783499 - 33783387
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    |||||||||||||||||||||| ||||||||||         || ||||||||| | | ||||||||||||||||||||| |||||||||| |||| |||    
T  33783499 aaccaaattttttatatttgcaaggactaaaactaaaaaaaatatttttacaggaattgaaaccaaaatatcagatatttgcagggactatcttcatatt 33783400  T
Q  100 taagccaataaaa 112  Q
    |||||||| ||||    
T  33783399 taagccaaaaaaa 33783387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 17238090 - 17238021
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagccaataaaaaa 114  Q
    |||| |||| ||||||||||||||||||||||||| ||||||  |||| || ||||||||||||||||||    
T  17238090 ttttgcagggactaaaaccaaaatatcagatatttgcagggatcatttccatatttaagccaataaaaaa 17238021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 30609147 - 30609253
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||||| |||||||||||       || ||||| ||| ||||||||||||| | ||||||||| ||||||| ||||||| ||||    
T  30609147 aaccaaatattatatatttgcatggactaaaacccaaaaaatatttttatagggactaaaaccaaaacaccagatatttgcagggaccattttcatattt 30609246  T
Q  101 aagccaa 107  Q
    |||||||    
T  30609247 aagccaa 30609253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16525474 - 16525579
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||| |||||||||||||        || ||||||| | |||||| ||||||| |||||||||| | | ||| ||||||| ||||    
T  16525474 aaccaaattttttatatttacagggactaaaacaaaaaaaatatttttacaaggactaaatccaaaatgtcagatatttgcggagacgattttcatattt 16525573  T
Q  101 aagcca 106  Q
    ||||||    
T  16525574 aagcca 16525579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 31717476 - 31717532
Alignment:
Q  50 caggtactaaaaccaaaatatcagatatttccagggacta-ttttcacatttaagcc 105  Q
    |||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  31717476 cagggactaaaaccaaaatttcagatatttgcagggactatttttcacatttaagcc 31717532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 5140792 - 5140690
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||||||||||||||| |       || ||||  ||| |||||||||||||| |||||||||| ||||||| |||| || ||||    
T  5140792 aaccaaatattatatatttgcagggactaaaatcaaaaaaatatttttgtagggactaaaaccaaaatgtcagatatttgcagggaccatttccatattt 5140693  T
Q  101 aag 103  Q
    |||    
T  5140692 aag 5140690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16525295 - 16525262
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaacc 34  Q
    |||||||| |||||||||||||||||||||||||    
T  16525295 aaccaaatattttatatttgcagggactaaaacc 16525262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31717456 - 31717489
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaacc 34  Q
    |||||||||| |||||||||||||||||||||||    
T  31717456 aaccaaatttgttatatttgcagggactaaaacc 31717489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46962684 - 46962580
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       |  ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  46962684 aaccaaattttttatatttgcagggactaaaaccaaaaaattttttttacagggactaaaaccaaaatatcagatatttgcagggactattttcatattt 46962585  T
Q  101 aagcc 105  Q
    |||||    
T  46962584 aagcc 46962580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 49500124 - 49500228
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||| |||||||||||       || ||||||||| |||||||||||||||||| |||||| ||||||||||||||| ||||    
T  49500124 aaccaaattttttatatttgcaaggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatatcaaatatttgcagggactattttcatattt 49500223  T
Q  101 aagcc 105  Q
    |||||    
T  49500224 aagcc 49500228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 50645753 - 50645857
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||| ||| |||||||| ||||| |||||||||| ||||||||||||||| ||||    
T  50645753 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttatagggactaaaactaaaatgtcagatatttacagggactattttcatattt 50645852  T
Q  101 aagcc 105  Q
    |||||    
T  50645853 aagcc 50645857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38807819 - 38807922
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| ||||||| |||||| |||||||||| |||||||||||| || ||||    
T  38807819 aaccaaattttttatatttgcagggactaaaaccaaacatatatttttacagggactaaaatcaaaatgtcagatatttacagggactatttccatattt 38807918  T
Q  101 aagc 104  Q
    ||||    
T  38807919 aagc 38807922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29838396 - 29838294
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||| |||||||||        || |||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  29838396 aaccaaattttttatatttgcagagactaaaacgaaaaaaatatttttgcagggactaaaaccaaaatatcagatatttgcagggactattttcatattt 29838297  T
Q  101 aag 103  Q
    |||    
T  29838296 aag 29838294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17109953 - 17109849
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||| |||||||||       || ||||||| | | |||||||||||| |||||||||| ||||||||||||||| ||||    
T  17109953 aaccaaattttttatatttgcaggcactaaaaccaaaaaaatatttttacaaggattaaaaccaaaatgtcagatatttgcagggactattttcatattt 17109854  T
Q  101 aagcc 105  Q
    |||||    
T  17109853 aagcc 17109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32315478 - 32315374
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| |||||||||| ||||||||| |       || ||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||    
T  32315478 aaccaaattttctatatttgcaaggactaaaatcaaaaaaatatttttacagagactaaaaccaaaatgtcagatatttgcagggactattttcacattt 32315379  T
Q  101 aagcc 105  Q
    |||||    
T  32315378 aagcc 32315374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 14545930 - 14545823
Alignment:
Q  8 ttttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagccaa 107  Q
    ||||||||||||||||||||||||| |       || ||||||| | |||||||||||||| |||||||||| || |||||||||||||||||||||| |    
T  14545930 ttttttatatttgcagggactaaaatcaaaaaaatacttttacatggactaaaaccaaaatgtcagatatttgcaaggactattttcacatttaagccta 14545831  T
Q  108 taaaaaat 115  Q
     |||||||    
T  14545830 aaaaaaat 14545823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 55092491 - 55092592
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    |||||||||||||||||||| ||||||||||       || ||||||||  | |||||||||||| ||||||||||  |||||||||||||| |||||||    
T  55092491 caaattttttatatttgcagagactaaaaccaaaaaaatatttttacagagaataaaaccaaaatgtcagatatttggagggactattttcatatttaag 55092590  T
Q  104 cc 105  Q
    ||    
T  55092591 cc 55092592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42093497 - 42093393
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||| ||||||||||       || ||||||||| |||||| ||||||| |||||||||   || ||||||||||| ||||    
T  42093497 aaccaaattttttatatttgcagagactaaaaccaaaaaaatatttttacagggactaaatccaaaatgtcagatattaggagagactattttcatattt 42093398  T
Q  101 aagcc 105  Q
    |||||    
T  42093397 aagcc 42093393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 52835826 - 52835936
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||||||||||||||||||||||||||          || ||||||||| ||||||||||||||  | ||||||| ||||||||||||||| |||    
T  52835826 aaccaaattttttatatttgcagggactaaaataaaaaaatatatttttacagg-actaaaaccaaaatgacggatatttgcagggactattttcatatt 52835924  T
Q  100 taagccaataaa 111  Q
    ||||||||||||    
T  52835925 taagccaataaa 52835936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26582714 - 26582617
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||||| |||||||||||| ||||| |||       || ||||||||| ||||||||||||||||||||||||| | | |||||||||||||||    
T  26582714 aaccaaattttctatatttgcagg-actaacaccaacaaaatatttttacagggactaaaaccaaaatatcagatatttgcggagactattttcacatt 26582617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 27285072 - 27284960
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| ||||||| ||||||  ||||||||| ||||||| |||| || ||||    
T  27285072 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttataggaactaaaatcaaaatgccagatatttgcagggaccatttccatattt 27284973  T
Q  101 aagccaataaaaa 113  Q
    |||||||| ||||    
T  27284972 aagccaattaaaa 27284960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 32315700 - 32315759
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagc 104  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||||    
T  32315700 ttttacagggactaaaaccaaaatatcagatatttgcagggaccatttccatatttaagc 32315759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 27934742 - 27934836
Alignment:
Q  11 tttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||| |||||||||||| |       || |||||| || |||||||||| ||| |||||||||| ||||||||||||||| |||||||||    
T  27934742 tttatatttacagggactaaaatcaaaaaaatatttttactgggactaaaaccagaatgtcagatatttgcagggactattttcatatttaagcc 27934836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 49499945 - 49499832
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| ||||||||||||| | ||||||||| || |||| |||| || ||||    
T  49499945 aaccaaatattatatatttgcagggactaaaacccaaaaaatatttttatagggactaaaaccaaaacaccagatatttgcaaggaccatttccatattt 49499846  T
Q  101 aagccaataaaaaa 114  Q
    ||||| | ||||||    
T  49499845 aagcctaaaaaaaa 49499832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 52835647 - 52835541
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| ||||||| |||||   ||||||||| ||||||| |||| || ||||    
T  52835647 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttatagggactaaaatcaaaacgccagatatttgcagggaccatttccatattt 52835548  T
Q  101 aagccaa 107  Q
    |||||||    
T  52835547 aagccaa 52835541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 27934553 - 27934449
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||| |||||||||||||       || ||||| ||| |||||||||||||   ||||||||| ||||||| |||| || ||||    
T  27934553 aaccaaatattctatatttgaagggactaaaaccaaaaaaatatttttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatattt 27934454  T
Q  101 aagcc 105  Q
    |||||    
T  27934453 aagcc 27934449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 17109795 - 17109747
Alignment:
Q  55 actaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||||||||   |||||||| ||||||||||||||| |||||||    
T  17109795 actaaaaccaaaatgctagatatttgcagggactattttcatatttaag 17109747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 27285250 - 27285282
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    ||||||| |||||||||||||||||||||||||    
T  27285250 aaccaaactttttatatttgcagggactaaaac 27285282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33162601 - 33162714
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||||| |||||||||||       || ||||| ||| |||||||| ||||  |||||||||| | ||||| |||| || ||||    
T  33162601 aaccaaatattctatatttgcaaggactaaaaccaaaaaaatatttttatagggactaaaactaaaacgtcagatatttacggggaccatttccatattt 33162700  T
Q  101 aagccaataaaaaa 114  Q
    ||||| | ||||||    
T  33162701 aagcctaaaaaaaa 33162714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18369115 - 18369011
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  18369115 aaccaaattttttatatttgcagggactaaaacccaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 18369016  T
Q  101 aagcc 105  Q
    |||||    
T  18369015 aagcc 18369011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 41594053 - 41593952
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| |||||||||||| |||||||||       || ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||    
T  41594053 aaccaaattttctatatttgcaggaactaaaaccaaaaaaatatttttacagggactaaaaccaaaatatcagatatttgcaggaactattttcacattt 41593954  T
Q  101 aa 102  Q
    ||    
T  41593953 aa 41593952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28921474 - 28921578
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| | |||||||||||| ||| |||||| ||||||||||||||| ||||    
T  28921474 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggattaaaaccaaaatgtcatatatttgcagggactattttcatattt 28921573  T
Q  101 aagcc 105  Q
    |||||    
T  28921574 aagcc 28921578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 29683455 - 29683558
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| ||||||| |||||| |||||||||| |||||||||||| || ||||    
T  29683455 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaatcaaaatgtcagatatttgcagggactatttccatattt 29683554  T
Q  101 aagc 104  Q
    ||||    
T  29683555 aagc 29683558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 2395441 - 2395542
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||||||||||||||||| ||||||        || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  2395441 caaattttttatatttgcagggattaaaacaaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatatttaag 2395540  T
Q  104 cc 105  Q
    ||    
T  2395541 cc 2395542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4171806 - 4171907
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||| ||||||||||||       || |||||| |  |||||||||||||| |||||||||| ||||||||||||||||||||    
T  4171806 aaccaaattttttatatttgctgggactaaaaccaaaaaaatatttttaccgagactaaaaccaaaatgtcagatatttgcagggactattttcacattt 4171905  T
Q  101 aa 102  Q
    ||    
T  4171906 aa 4171907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14379215 - 14379114
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||| |||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| || |||||||||||| ||||    
T  14379215 aaccaaattttttacatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcaaggactattttcatattt 14379116  T
Q  101 aa 102  Q
    ||    
T  14379115 aa 14379114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10748596 - 10748493
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||| |||||||       || ||||||||| |||||||||||||| |||||| ||| ||| ||||||||||| ||||    
T  10748596 aaccaaattttttatatttgcagggattaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatgtttgcagagactattttcatattt 10748497  T
Q  101 aagc 104  Q
    ||||    
T  10748496 aagc 10748493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41594232 - 41594335
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| |||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||| |||| || ||||    
T  41594232 aaccaaatattttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggaccatttccatattt 41594331  T
Q  101 aagc 104  Q
    ||||    
T  41594332 aagc 41594335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 30432654 - 30432594
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  30432654 ttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcacatttaagcc 30432594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12806830 - 12806934
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||| ||||||||||       || |||||| || |||||||||||||| | |||||||| ||||||| ||||||| ||||    
T  12806830 aaccaaattttttatatttgcagtgactaaaaccaaaaaaatatttttacggggactaaaaccaaaatgttagatatttgcagggacaattttcatattt 12806929  T
Q  101 aagcc 105  Q
    |||||    
T  12806930 aagcc 12806934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 33940783 - 33940679
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||| ||||||||        || ||||||||| ||||||| |||||| | |||||||| ||||||||||||||| ||||    
T  33940783 aaccaaattttttatatttgcaggaactaaaactaaaaaaatatttttacagggactaaaatcaaaatgtaagatatttgcagggactattttcatattt 33940684  T
Q  101 aagcc 105  Q
    |||||    
T  33940683 aagcc 33940679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 42705233 - 42705335
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||  ||||||||||       || ||||||||  |||||| ||||||| |||||||||| ||||||||||||||| ||||    
T  42705233 aaccaaattttttatatttgcactgactaaaaccaaaaaaatatttttacagagactaaatccaaaatgtcagatatttgcagggactattttcatattt 42705332  T
Q  101 aag 103  Q
    |||    
T  42705333 aag 42705335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 3948466 - 3948364
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||| ||| |||||||  ||||| |||| ||||| || |||||||||||| ||||    
T  3948466 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttatagggactaaaattaaaatgtcaggtatttgcatggactattttcatattt 3948367  T
Q  101 aag 103  Q
    |||    
T  3948366 aag 3948364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 17457776 - 17457715
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcca 106  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||||||||| ||||||||||||    
T  17457776 ttttacaggaactaaaaccaaaatttcaaatatttgcagggactatttttacatttaagcca 17457715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 30432888 - 30432980
Alignment:
Q  13 tatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| | ||||| |||| || |||||||||    
T  30432888 tatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgccgggaccatttccatatttaagcc 30432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7877426 - 7877323
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaacc-nnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||||||||||||||||||||||||||||        || ||||||||| |||| || |||||| |  ||||||| ||||||||||||||| |||    
T  7877426 aaccaaattttttatatttgcagggactaaaaccaaaaaaaatatttttacaggaactacaatcaaaatgtatgatatttgcagggactattttcatatt 7877327  T
Q  100 taag 103  Q
    ||||    
T  7877326 taag 7877323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 3371583 - 3371689
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||||        || |||||| || |||||||||||||| |||  ||||| | | ||| ||||||| ||||    
T  3371583 aaccaaattttttatatttgcagggactaaaactaaaaaaatatttttactgggactaaaaccaaaatgtcacgtatttactgagacaattttcatattt 3371682  T
Q  101 aagccaa 107  Q
    |||||||    
T  3371683 aagccaa 3371689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 13572755 - 13572853
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    |||||||||||||||||| ||||||||||||       || ||||||||| | |||||||||||| ||| |||||| || | |||||||||| ||||||    
T  13572755 caaattttttatatttgctgggactaaaaccaaaaaaatatttttacagggattaaaaccaaaatgtcatatatttgcaagaactattttcatatttaa 13572853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19204873 - 19204978
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||||||||||||||||||||||||||          || ||||||| | ||||||||||||||  | ||||||| ||||||||||||||| |||    
T  19204873 aaccaaattttttatatttgcagggactaaaataaaaaaaaatatttttacaaggactaaaaccaaaatgacggatatttacagggactattttcatatt 19204972  T
Q  100 taagcc 105  Q
    ||||||    
T  19204973 taagcc 19204978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 29683278 - 29683174
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||| ||||||||       || ||||| ||| |||||||||||||   ||||||||| ||||||| ||||||| ||||    
T  29683278 aaccaaatattctatatttgcaggggctaaaaccaaaaaaatatttttatagggactaaaaccaaaacgccagatatttgcagggaccattttcatattt 29683179  T
Q  101 aagcc 105  Q
    |||||    
T  29683178 aagcc 29683174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 6880055 - 6879998
Alignment:
Q  50 caggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagccaa 107  Q
    |||| |||||||||||||| ||||||||||  |||||| ||||||| |||||||||||    
T  6880055 cagggactaaaaccaaaatgtcagatatttgtagggacaattttcatatttaagccaa 6879998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 28921292 - 28921180
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||| || ||||||||||||||||||||||       || ||||| ||| ||||| ||||||| ||||||||||| ||||||| |||| || | |||||    
T  28921292 caaatattctatatttgcagggactaaaaccaaaaaa-tatttttatagggactaataccaaaacatcagatatttgcagggaccatttccatagttaag 28921194  T
Q  104 ccaataaaaaatgt 117  Q
    ||  ||||||||||    
T  28921193 cctttaaaaaatgt 28921180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 37609236 - 37609340
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| |||||||||||||   ||||||||| || |||| |||| || ||||    
T  37609236 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttagagggactaaaaccaaaacgccagatatttgcaaggaccatttccatattt 37609335  T
Q  101 aagcc 105  Q
    |||||    
T  37609336 aagcc 37609340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 6880072 - 6880042
Alignment:
Q  4 caaattttttatatttgcagggactaaaacc 34  Q
    |||||||||||||||||||||||||||||||    
T  6880072 caaattttttatatttgcagggactaaaacc 6880042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32521756 - 32521788
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||||||||||||||||||||||| ||||||    
T  32521756 aaccaaattttttatatttgcagggattaaaac 32521788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39027583 - 39027480
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| ||||||| |||||| |||||||||||| ||||||||||||||||||    
T  39027583 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaagcaaaatgtcagatatttccggggactattttcacattt 39027484  T
Q  101 aagc 104  Q
    ||||    
T  39027483 aagc 39027480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 20061897 - 20061796
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    |||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  20061897 caaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatatttaag 20061798  T
Q  104 cc 105  Q
    ||    
T  20061797 cc 20061796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 50625047 - 50625149
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       |  ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  50625047 aaccaaattttttatatttgcagggactaaaaccaaattttt--ttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 50625144  T
Q  101 aagcc 105  Q
    |||||    
T  50625145 aagcc 50625149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28031928 - 28032032
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| |||||||||||||||||||||||||        || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  28031928 aaccaaaatttttatatttgcagggactaaaactaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 28032027  T
Q  101 aagcc 105  Q
    |||||    
T  28032028 aagcc 28032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 42155031 - 42155134
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || |||||||||  ||||||||||||| |||||||||| ||||||||||||||| ||||    
T  42155031 aaccaaattttttatatttgcagggactaaaaccaaaaaa-tatttttacaggatctaaaaccaaaatgtcagatatttacagggactattttcatattt 42155129  T
Q  101 aagcc 105  Q
    |||||    
T  42155130 aagcc 42155134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 43191758 - 43191655
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||| |||||||||||||||||||||||||||       || ||||||||| |||||||| |||||||||||||||| ||||||| ||||||| ||||    
T  43191758 aaccaatttttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaactaaaatatcagatatttgcagggacaattttcatattt 43191659  T
Q  101 aagc 104  Q
    ||||    
T  43191658 aagc 43191655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 50096414 - 50096527
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| |||||||| |||||||||||||       || ||||||| | ||  |||||||||| |||||||||| ||||||||||||||||||||    
T  50096414 aaccaaattttctatatttgtagggactaaaaccaaaaaattatttttacacggacctaaaccaaaatgtcagatatttgcagggactattttcacattt 50096513  T
Q  101 aagccaataaaaaa 114  Q
    ||||||| ||||||    
T  50096514 aagccaaaaaaaaa 50096527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 26244830 - 26244934
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| |||||||||||||||||||| |       || |||| |||| | |||||||||||| |||||||||| |||| |||||||||||||||    
T  26244830 aaccaaattttctatatttgcagggactaaaatcaaaaaaatattttttcagggattaaaaccaaaatgtcagatatttgcaggaactattttcacattt 26244929  T
Q  101 aagcc 105  Q
    |||||    
T  26244930 aagcc 26244934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50096235 - 50096132
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||| |||| || ||||    
T  50096235 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggacaatttccatattt 50096136  T
Q  101 aagc 104  Q
    ||||    
T  50096135 aagc 50096132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 37172347 - 37172246
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||||||||||| ||||||||||| |       || ||||||||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||    
T  37172347 caaattttttatatttgaagggactaaaatcaaaaatatatttttacagggactaaaaccaaaatgacagatatttgcagagactattttcatatttaag 37172248  T
Q  104 cc 105  Q
    ||    
T  37172247 cc 37172246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 26244648 - 26244547
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||| || ||||||||||||||||||| ||       || ||||||||| |||||||||||||| |||||||||| ||||||| |||| || |||||||    
T  26244648 caaatattctatatttgcagggactaaatccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggaccatttccatatttaag 26244549  T
Q  104 cc 105  Q
    ||    
T  26244548 cc 26244547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 14602345 - 14602393
Alignment:
Q  57 taaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  14602345 taaaaccaaaatgtcagatatttgcagggactattttcatatttaagcc 14602393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33838 - 33942
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||| ||| || |||||||       || ||||||||| |||||||||||||| ||||||||||  || || |||||||  ||||    
T  33838 aaccaaattttttatatttacagagaataaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgtagagattattttcttattt 33937  T
Q  101 aagcc 105  Q
    |||||    
T  33938 aagcc 33942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20062079 - 20062183
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| |||||||||||||   ||||||||| ||||||| |||| || ||||    
T  20062079 aaccaaatattctatatttgcagggactaaaacccaaaaaatatttttatagggactaaaaccaaaacgccagatatttgcagggaccatttccatattt 20062178  T
Q  101 aagcc 105  Q
    |||||    
T  20062179 aagcc 20062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 33619177 - 33619281
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||| |||||||||||||       || ||||| ||| ||||||||||||| | ||||||||| ||||||| |||| || ||||    
T  33619177 aaccaaatattctatatttgtagggactaaaaccaaaaaaatatttttataggaactaaaaccaaaacaccagatatttgcagggaccatttccatattt 33619276  T
Q  101 aagcc 105  Q
    |||||    
T  33619277 aagcc 33619281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 47829287 - 47829342
Alignment:
Q  47 ttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    ||||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||    
T  47829287 ttacaggaactaaaaccaaaatgtcagatatttgcagggacaattttcatatttaa 47829342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 51999495 - 51999450
Alignment:
Q  61 accaaaatatcagatatttccagggactattttcacatttaagcca 106  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  51999495 accaaaatatcagatatttgcagagactattttcatatttaagcca 51999450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10914055 - 10914128
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcaga 74  Q
    |||||||||| |||||||||||||||||||||||       || ||||||| | |||||||||||||| |||||    
T  10914055 aaccaaatttgttatatttgcagggactaaaaccaaaaaaatatttttacacggactaaaaccaaaatgtcaga 10914128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 12322194 - 12322090
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||| ||||||||| |||       || ||||| ||| |||||||||||||  |||||||||| ||| ||| ||||||| ||||    
T  12322194 aaccaaatattctatatttgtagggactaataccaaaaaaatatttttatagggactaaaaccaaaacgtcagatatttacagagaccattttcatattt 12322095  T
Q  101 aagcc 105  Q
    |||||    
T  12322094 aagcc 12322090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18963711 - 18963607
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||||| |||||||||||       || ||||| ||| |||||||||||||   | ||||||| ||||||| |||| |||||||    
T  18963711 aaccaaatattctatatttgcaaggactaaaaccaaaaaaatatttttatagggactaaaaccaaaacgccggatatttgcagggaccatttccacattt 18963612  T
Q  101 aagcc 105  Q
    |||||    
T  18963611 aagcc 18963607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 12322418 - 12322478
Alignment:
Q  45 ttttacaggtactaaaaccaaaata-tcagatatttccagggactattttcacatttaagc 104  Q
    ||||||||| | ||||||||||||  |||||||||| | ||||||||||||| ||||||||    
T  12322418 ttttacagggattaaaaccaaaattgtcagatatttacggggactattttcatatttaagc 12322478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14602291 - 14602323
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||| ||||||||||||||||||||||||||    
T  14602291 aaccaatttttttatatttgcagggactaaaac 14602323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 39288210 - 39288150
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||  ||||||| |||||| ||| ||||||  |||||||||||||| |||||||||    
T  39288210 ttttacagagactaaaatcaaaatgtcatatatttggagggactattttcatatttaagcc 39288150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47829243 - 47829275
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||| ||||||||||||||||||||||||||    
T  47829243 aaccaatttttttatatttgcagggactaaaac 47829275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43379 - 43275
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||||        || ||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  43379 aaccaaattttttatatttgcagggactaaaacaaaaaatatatttttacagggactaaaaccaaaatgtcaaatatttgcagggactattttcacattt 43280  T
Q  101 aagcc 105  Q
    |||||    
T  43279 aagcc 43275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 42517151 - 42517259
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    |||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| | |||| ||||||||||||||||    
T  42517151 caaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcggggattattttcacatttaag 42517250  T
Q  104 ccaataaaa 112  Q
     ||||||||    
T  42517251 tcaataaaa 42517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 24458 - 24352
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||| |||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| | ||||||||||||| ||||    
T  24458 aacccaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgccgggactattttcatattt 24359  T
Q  101 aagccaa 107  Q
    |||||||    
T  24358 aagccaa 24352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 19157974 - 19158078
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| |||||||||||||||||||||||||        || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  19157974 aaccaaaatttttatatttgcagggactaaaactaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 19158073  T
Q  101 aagcc 105  Q
    |||||    
T  19158074 aagcc 19158078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 20757373 - 20757477
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| |||||||||||||||||||||||||        || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  20757373 aaccaaaatttttatatttgcagggactaaaactaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 20757472  T
Q  101 aagcc 105  Q
    |||||    
T  20757473 aagcc 20757477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22364756 - 22364656
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||        |   ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  22364756 aaccaaattttttatatttgcagggactaaaaccaaaaaaaaa---ttacagggactaaaaccaaaatgtcagatatttgcagggactattttcacattt 22364660  T
Q  101 aagc 104  Q
    ||||    
T  22364659 aagc 22364656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40729344 - 40729448
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||| |||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||  ||||||||||| ||||    
T  40729344 aacccaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcaaagactattttcatattt 40729443  T
Q  101 aagcc 105  Q
    |||||    
T  40729444 aagcc 40729448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 44483507 - 44483611
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| ||||||||||||||||||||||||||       || ||||||||| |||||||||||||| | | |||||| | ||||||||||||||||||    
T  44483507 aaccaaaatttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgttaaatatttgcggggactattttcacattt 44483606  T
Q  101 aagcc 105  Q
    |||||    
T  44483607 aagcc 44483611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 34595600 - 34595712
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||| ||       || ||||| ||| |||||||||||||  |||||||||| ||||||| ||||||| ||||    
T  34595600 aaccaaatattctatatttgcagggactaaagccaaaaaaatatttttatagggactaaaaccaaaacgtcagatatttacagggaccattttcatattt 34595699  T
Q  101 aagccaataaaaa 113  Q
    |||||||||||||    
T  34595700 aagccaataaaaa 34595712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 44219396 - 44219294
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||  ||||||||||| |       || ||||||||  |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  44219396 aaccaaattttttatatttatagggactaaaaacaaaaaaatatttttacagtgactaaaaccaaaatgtcagatatttgcagggactattttcatattt 44219297  T
Q  101 aag 103  Q
    |||    
T  44219296 aag 44219294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35026725 - 35026828
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||| |||||||||||| ||| ||||||||||       || ||||||| | |||||||||||||| ||| |||||| ||||||||||||||| ||||    
T  35026725 aaccaatttttttatatttacagagactaaaaccaaaaaaatatttttacatgaactaaaaccaaaatgtca-atatttacagggactattttcatattt 35026823  T
Q  101 aagcc 105  Q
    |||||    
T  35026824 aagcc 35026828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 13426383 - 13426325
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||| | |||||||    
T  13426383 ttttacaggaactaaaaccaaaatgtcagatatttgcagggactattttgatatttaag 13426325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 31579497 - 31579440
Alignment:
Q  47 ttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagc 104  Q
    ||||||| | ||||| |||||||||||||||||  |||||||||||||||||||||||    
T  31579497 ttacaggaattaaaatcaaaatatcagatatttgtagggactattttcacatttaagc 31579440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 830006 - 830069
Alignment:
Q  47 ttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagccaataa 110  Q
    ||||||| | |||||| ||||| |||||||||| || |||||||||||||||||||||| ||||    
T  830006 ttacagggattaaaactaaaatgtcagatatttgcaaggactattttcacatttaagcctataa 830069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 1195186 - 1195249
Alignment:
Q  47 ttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagccaataa 110  Q
    ||||||| | |||||| ||||| |||||||||| || |||||||||||||||||||||| ||||    
T  1195186 ttacagggattaaaactaaaatgtcagatatttgcaaggactattttcacatttaagcctataa 1195249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 42516957 - 42516866
Alignment:
Q  13 tatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagc 104  Q
    ||||||||||||||||||||||       || ||||| ||| ||||||||||||||  ||||||||| ||||||| |||| || ||||||||    
T  42516957 tatatttgcagggactaaaaccaaaaaaatatttttataggaactaaaaccaaaatgccagatatttgcagggaccatttccatatttaagc 42516866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 13426573 - 13426678
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| |||||||| ||||  |||||||||| ||||||| |||  || ||||    
T  13426573 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttagagggactaaaactaaaacgtcagatatttgcagggaccattcccatattt 13426672  T
Q  101 aagcca 106  Q
    ||||||    
T  13426673 aagcca 13426678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 19476720 - 19476780
Alignment:
Q  45 ttttacaggtactaaaaccaaaa-tatcagatatttccagggactattttcacatttaagc 104  Q
    ||||||||| |||||||| |||| |||||||||||| || |||||||||||| ||||||||    
T  19476720 ttttacaggaactaaaactaaaaatatcagatatttgcaaggactattttcatatttaagc 19476780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 35026503 - 35026442
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcca 106  Q
    ||||||||| |||||||||||||  |||||| ||| ||||||| |||| || ||||||||||    
T  35026503 ttttacagggactaaaaccaaaacgtcagatgtttgcagggaccatttccatatttaagcca 35026442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 829962 - 829994
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||||||||||||||||||||||||| ||||    
T  829962 aaccaaattttttatatttgcagggactgaaac 829994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1195142 - 1195174
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||||||||||||||||||||||||| ||||    
T  1195142 aaccaaattttttatatttgcagggactgaaac 1195174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22954442 - 22954410
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaac 33  Q
    |||||| ||||||||||||||||||||||||||    
T  22954442 aaccaatttttttatatttgcagggactaaaac 22954410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 22394226 - 22394122
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||    
T  22394226 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggacaattttcatattt 22394127  T
Q  101 aagcc 105  Q
    |||||    
T  22394126 aagcc 22394122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24490945 - 24490842
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||| ||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  24490945 aaccaaattttctatatttgcagggactaaaaccaaaaaa-tatttttacagggactaaaaccaaaatgtcagatatttgcagggactattttcacattt 24490847  T
Q  101 aagcc 105  Q
    |||||    
T  24490846 aagcc 24490842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3598694 - 3598799
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||  ||||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| || |||||||||||||||||    
T  3598694 aaccaaatttcctatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcaaggactattttcacattt 3598793  T
Q  101 aagcca 106  Q
    ||||||    
T  3598794 aagcca 3598799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4122679 - 4122568
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||| |       |  ||||||||| ||||||| |||||| ||| |||||| ||||||||||||||| ||||    
T  4122679 aaccaaattttttatatttgcagggactaaaatcaatttttt--ttttacagggactaaaatcaaaatgtcaaatatttgcagggactattttcatattt 4122582  T
Q  101 aagccaataaaaaa 114  Q
    ||||||||||||||    
T  4122581 aagccaataaaaaa 4122568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 43196999 - 43196897
Alignment:
Q  5 aaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagc 104  Q
    ||||||||||||||||||||||||||||||       || ||||||||| |||||||||||||| ||||||||||  | |||||||||||| ||||||||    
T  43196999 aaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgtaaggactattttcatatttaagc 43196900  T
Q  105 caa 107  Q
    |||    
T  43196899 caa 43196897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 6497473 - 6497577
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||| ||||||| |       || ||||||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||    
T  6497473 aaccaaattttttatatttgcaggaactaaaatcaaaaaaatatttttacagggactaaaaccaaaatgtcagatatttgcagggacaattttcatattt 6497572  T
Q  101 aagcc 105  Q
    |||||    
T  6497573 aagcc 6497577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 6542358 - 6542257
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    |||||||||||||||||||||||||||||||       || ||||||| | ||||||||||||||||||||||||| | || || ||||||| |||||||    
T  6542358 caaattttttatatttgcagggactaaaaccaaaaaaatatttttacatggactaaaaccaaaatatcagatatttgcgggaacaattttcatatttaag 6542259  T
Q  104 cc 105  Q
    ||    
T  6542258 cc 6542257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 14868961 - 14869054
Alignment:
Q  9 tttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    ||||||||||||||||||||||||||       || ||||||||  |||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  14868961 tttttatatttgcagggactaaaaccaaaaaaatatttttacagtgactaaaaccaaaatgtcagatatttgcagggactattttcatatttaa 14869054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 3598515 - 3598403
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||||||| |||||| ||||||| |||||||||| ||||||| ||||||| ||||    
T  3598515 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttacagggactaaatccaaaatgtcagatatttgcagggaccattttcatattt 3598416  T
Q  101 aagccaataaaaa 113  Q
    |||  ||||||||    
T  3598415 aagaaaataaaaa 3598403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 25329196 - 25329098
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    ||||||||||||||||| ||||||||||||        || ||||||||| ||||||| ||||||||||||||||| | ||||||||||||| ||||||    
T  25329196 caaattttttatatttgtagggactaaaacaaaaaatatatttttacaggaactaaaatcaaaatatcagatatttgcggggactattttcatatttaa 25329098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10461447 - 10461341
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||         || |||||||   ||||||||||||||  | ||||||| ||||||||||||||| ||||    
T  10461447 aaccaaattttttatatttgcagggactaaaataaaaaaaatatttttacaaagactaaaaccaaaatgacggatatttgcagggactattttcatattt 10461348  T
Q  101 aagccaa 107  Q
    |||||||    
T  10461347 aagccaa 10461341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 15969711 - 15969810
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||||||||||||| |       || ||||||||| ||||||| ||||||      ||||| ||||||||||||||||||||    
T  15969711 aaccaaattttttatatttgcagggactaaaatcaaaaaattatttttacagggactaaaatcaaaat-----gtatttgcagggactattttcacattt 15969805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 24491124 - 24491228
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||||||| |||||||||||||| ||||||  || ||||||| |||| || ||||    
T  24491124 aaccaaatattctatatttgcagggactaaaaccaaacaaatatttttacagggactaaaaccaaaatgtcagattattgcagggaccatttccatattt 24491223  T
Q  101 aagcc 105  Q
    |||||    
T  24491224 aagcc 24491228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 7133465 - 7133514
Alignment:
Q  57 taaaaccaaaatatcagatatttccagggactattttcacatttaagcca 106  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  7133465 taaaaccaaaatatcagatatttgcggagactattttcacatttaagcca 7133514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 5933178 - 5933123
Alignment:
Q  50 caggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    |||| |||||||||||||| ||| |||||| ||||||| ||||||| |||||||||    
T  5933178 cagggactaaaaccaaaatgtcacatatttgcagggacaattttcatatttaagcc 5933123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10461626 - 10461730
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| ||||||| |||||   ||||||||| ||||||| |||| || ||||    
T  10461626 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttatagggactaaaatcaaaacgccagatatttgcagggaccatttccatattt 10461725  T
Q  101 aagcc 105  Q
    |||||    
T  10461726 aagcc 10461730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 41137475 - 41137522
Alignment:
Q  55 actaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    |||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  41137475 actaaaacaaaaatatcaaatatttgcagggactattttcatatttaa 41137522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18786262 - 18786362
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || |||||||||||| |||||||||       || ||||||||| |||||||||||||   ||||||||| ||||||| |||| || ||||    
T  18786262 aaccaaatattctatatttgcagg-actaaaaccaaaaaaatatttttacagggactaaaaccaaaacgccagatatttgcagggaccatttccatattt 18786360  T
Q  101 aa 102  Q
    ||    
T  18786361 aa 18786362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 3273001 - 3273106
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||| ||||||||||||||||||||||||| |       || ||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  3273001 aaccaagttttttatatttgcagggactaaaatcaaaaaaatatttttatagggactaaaaccaaaatgtcagatatttgcagggactattttcacattt 3273100  T
Q  101 aagcca 106  Q
    ||||||    
T  3273101 aagcca 3273106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 6943941 - 6944042
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||||||| |||||||||||||||||||||       || ||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  6943941 caaatttttcatatttgcagggactaaaaccaaaaaaatatttttacaggaactaaaaccaaaatgtcagatatttgcagggactattttcatatttaag 6944040  T
Q  104 cc 105  Q
    ||    
T  6944041 cc 6944042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31403015 - 31402910
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnn-tagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    |||||||| |||||||||||||||||||||||||        || ||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||    
T  31403015 aaccaaatattttatatttgcagggactaaaaccccaaaaaatatttttacaaggactaaaaccaaaatatcagatatttgcagggactattttcatatt 31402916  T
Q  100 taagcc 105  Q
    ||||||    
T  31402915 taagcc 31402910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18764387 - 18764283
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| |||||||||||| ||||||| |||||       || ||||||| | |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  18764387 aaccaaagtttttatatttgaagggactcaaaccaaaaaaatatttttacaaggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 18764288  T
Q  101 aagcc 105  Q
    |||||    
T  18764287 aagcc 18764283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 26479427 - 26479324
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||| ||||||||||||||| ||||||||||       |  ||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  26479427 aaccaaaatttttatatttgcagtgactaaaaccaattttttt-ttttacagggactaaaaccaaaatgtcaaatatttgcagggactattttcacattt 26479329  T
Q  101 aagcc 105  Q
    |||||    
T  26479328 aagcc 26479324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 105
Target Start/End: Original strand, 2835379 - 2835478
Alignment:
Q  6 aattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||||||||||||||||||||| |       || ||||||||  |||||||||||||| |||||||||| | ||||||||||||| |||||||||    
T  2835379 aattttttatatttgcagggactaaaatcaaaaaaatatttttacagcgactaaaaccaaaatgtcagatatttgcggggactattttcatatttaagcc 2835478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13154520 - 13154623
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||| |||||||||||||||||||||||||||       || ||||||||| | ||||| |||||| ||||||||||  |||||||||||||| ||||    
T  13154520 aaccaatttttttatatttgcagggactaaaaccaaaaaaatatttttacagggattaaaatcaaaatgtcagatatttgtagggactattttcatattt 13154619  T
Q  101 aagc 104  Q
    ||||    
T  13154620 aagc 13154623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9180326 - 9180428
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||||| |||||||||||       || ||||||||| | |||||||||||| |||||||||| |||||| ||| |||| ||||    
T  9180326 aaccaaattttttatatttgcaaggactaaaaccaaaacaatatttttacagggattaaaaccaaaatgtcagatatttgcagggattatattcatattt 9180425  T
Q  101 aag 103  Q
    |||    
T  9180426 aag 9180428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13405729 - 13405835
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||||||||||||||| |||||||||||||       || ||||||||| | |||||||||||| ||| |||||| |||  |||||||||||||||    
T  13405729 aaccaaattttttatatttgaagggactaaaaccaaaaaaatatttttacagggattaaaaccaaaatgtcaaatatttgcagaaactattttcacattt 13405828  T
Q  101 aagccaa 107  Q
    || ||||    
T  13405829 aaaccaa 13405835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 31186670 - 31186726
Alignment:
Q  46 tttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  31186670 tttacagggactaaaaccaaaatgtcagatatttgcagggactattttcatatttaa 31186726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 13154338 - 13154227
Alignment:
Q  4 caaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    ||||| || ||||||||||||||||||||||       || ||||| ||| ||||||||||||| | ||||||||| ||||||| |||| || |||||||    
T  13154338 caaatattctatatttgcagggactaaaaccaaaaaaatatttttagagggactaaaaccaaaacaccagatatttgcagggaccatttccatatttaag 13154239  T
Q  104 ccaataaaaaat 115  Q
    || | |||||||    
T  13154238 cctaaaaaaaat 13154227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31685952 - 31685985
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaacc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31685952 aaccaaattttttatatttgcagggactaaaacc 31685985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 36867 - 36765
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||||||||||||||       || |||  |||| |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  36867 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttt--cagggactaaaaccaaaatgtcagatatttgcagggactattttcatattt 36770  T
Q  101 aagcc 105  Q
    |||||    
T  36769 aagcc 36765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8644 - 8538
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtact-aaaaccaaaatatcagatatttccagggactattttcacatt 99  Q
    ||||||||||||||||||||||||||||||||||       || ||||||||| ||| ||||||||||| | |||||||| ||||||| ||||||| |||    
T  8644 aaccaaattttttatatttgcagggactaaaaccaaaaaaatatttttacagggactaaaaaccaaaatgttagatatttgcagggacaattttcatatt 8545  T
Q  100 taagcca 106  Q
    |||||||    
T  8544 taagcca 8538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 118313 - 118418
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    ||||||||||||||||||||||| ||||||||||       || ||||||||| || |||||||||||||||||||||| || |||  ||||||| ||||    
T  118313 aaccaaattttttatatttgcagtgactaaaaccaaaaaaatatttttacagggacgaaaaccaaaatatcagatatttgca-ggataattttcatattt 118411  T
Q  101 aagccaa 107  Q
    |||||||    
T  118412 aagccaa 118418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 25461 - 25521
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  25461 ttttacagggactaaaaccaaaatatcagatatttgcggggactattttcatatttaagcc 25521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 212509 - 212410
Alignment:
Q  5 aaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagc 104  Q
    |||||||||| ||||||||||||| |||||       || ||||||||| |||||||||||||| || ||||||| | ||||||||||||| ||||||||    
T  212509 aaatttttta-atttgcagggacttaaaccaaaaaaatatttttacagggactaaaaccaaaatgtctgatatttgcggggactattttcatatttaagc 212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 212693 - 212797
Alignment:
Q  1 aaccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacattt 100  Q
    |||||||| || ||||||||||||||||||||||       || ||||| ||| ||||||||||||| ||||||||||| | ||||| |||| || ||||    
T  212693 aaccaaatattctatatttgcagggactaaaaccaaaaaaatatttttatagggactaaaaccaaaacatcagatatttacggggaccatttccatattt 212792  T
Q  101 aagcc 105  Q
    |||||    
T  212793 aagcc 212797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 74197 - 74300
Alignment:
Q  3 ccaaattttttatatttgcagggactaaaaccnnnnnnntagttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaa 102  Q
    ||||||||||||||||||||||||||||||||       || ||||  | | ||| |||||||||| | |||||||| ||||||||||||||| ||||||    
T  74197 ccaaattttttatatttgcagggactaaaaccaaaaaaatattttttgaaggact-aaaccaaaatgttagatatttgcagggactattttcatatttaa 74295  T
Q  103 gccaa 107  Q
     ||||    
T  74296 accaa 74300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 43994 - 44051
Alignment:
Q  46 tttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaag 103  Q
    |||||||| |||||||||||||| ||| |||||| ||||||||||||| | |||||||    
T  43994 tttacagggactaaaaccaaaatgtcaaatatttgcagggactatttttatatttaag 44051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 36318 - 36378
Alignment:
Q  45 ttttacaggtactaaaaccaaaatatcagatatttccagggactattttcacatttaagcc 105  Q
    ||||| ||| |||||||| ||||  |||||||||| ||||||||||||| | |||||||||    
T  36318 ttttatagggactaaaactaaaacgtcagatatttgcagggactatttttatatttaagcc 36378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University