View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15531_low_4 (Length: 575)
Name: NF15531_low_4
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 109 - 562
Target Start/End: Complemental strand, 3438397 - 3437944
Alignment:
| Q |
109 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaagcacatataactaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3438397 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaatcacatataactaaa |
3438298 |
T |
|
| Q |
209 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438297 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
3438198 |
T |
|
| Q |
309 |
caacaagataatcagaaagctttttgtttatctttccccttattgttctagcactatactccaacttctcagaagcaacccaaagaggcacaacgttgtg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438197 |
caacaagataatcagaaagctttttgtttatctttccccttattgttctagcactatactccaacttctcagaagcaacccaaagaggcacaacgttgtg |
3438098 |
T |
|
| Q |
409 |
agcatcaacttcatgaacagtaaccaaatcacttactctctcacaaatctcagctttgcatttcttcacttctcttaaaggtgacatatctgtcaccaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438097 |
agcatcaacttcatgaacagtaaccaaatcacttactctctcacaaatctcagctttgcatttcttcacttctcttaaaggtgacatatctgtcaccaaa |
3437998 |
T |
|
| Q |
509 |
agtggagctccagattctctaacaaattgcgatacagtttcctccgcctcaccc |
562 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3437997 |
agtgaagctccacattctctaacaaatttcgatacagtttcctccgcctcaccc |
3437944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University