View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15531_low_5 (Length: 540)

Name: NF15531_low_5
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15531_low_5
NF15531_low_5
[»] chr3 (1 HSPs)
chr3 (8-530)||(25540653-25541175)
[»] scaffold0055 (8 HSPs)
scaffold0055 (499-530)||(10178-10209)
scaffold0055 (499-530)||(17216-17247)
scaffold0055 (499-530)||(28739-28770)
scaffold0055 (499-530)||(37911-37942)
scaffold0055 (499-530)||(45760-45791)
scaffold0055 (499-530)||(58485-58516)
scaffold0055 (499-530)||(62782-62813)
scaffold0055 (499-530)||(77175-77206)
[»] scaffold0052 (8 HSPs)
scaffold0052 (499-530)||(12869-12900)
scaffold0052 (499-530)||(21682-21713)
scaffold0052 (499-530)||(34261-34292)
scaffold0052 (499-530)||(39115-39146)
scaffold0052 (499-530)||(44078-44109)
scaffold0052 (499-530)||(58757-58788)
scaffold0052 (499-530)||(67295-67326)
scaffold0052 (499-530)||(74326-74357)


Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 25541175 - 25540653
Alignment:
Q  8 agtgagatgaagcaattgaagaattgtatgtaccattctctgtaacacttgaaacacatttggtggcaacaattaggcagcacaacttttgctttcacct 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25541175 agtgaaatgaagcaattgaagaattgtatgtaccattctctgtaacacttgaaacacatttggtggcaacaattaggcagcacaacttttgctttcacct 25541076  T
Q  108 ccaagcaaactccgcattctttttctctttcaatatcaattttagattctcttctgtctttgaaatcagtcttcttttgatatctattagcatatacttc 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25541075 ccaagcaaactccgcattctttttctctttcaatgtcaattttagattctcttctatctttgaaatcagtcttcttttgatatctattagcatatacttc 25540976  T
Q  208 tttctgcttcctttcttccaaatctgtgacacctttctgaagttgcaatagagcaggaaatataatcgctgaaaaacatgttaagtatgtgttgattatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25540975 tttctgcttcctttcttccaaatctgtgacacctttctgaagttgcaatagagcaggaaatataatcgctgaaaaacatgttaagtatgtgttgattatt 25540876  T
Q  308 atcatcaaagaacataaaacggattccataaaaaccctgaatagcaaaacaaaacaagataacaatacattcttattaacaaccttaaacttacaataaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25540875 atcatcaaagaacataaaacggattccataaaaaccctgaatagcaaaacaaaacaagataacaatacattcttattaacaaccttaaacttacaataaa 25540776  T
Q  408 attgtcttatgcttgctttcctttcataaattgaaatagtagtcttcccatttccatatgtctgcataaatatggattaaaatattttagagccgatccg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25540775 attgtcttatgcttgctttcctttcataaattgaaatagtagtcttcccatttccatatgtctgcataaatgtggattaaaatattttagagccgatccg 25540676  T
Q  508 ggcggaagacattgtcaggtggg 530  Q
    |||||||||||||||||||||||    
T  25540675 ggcggaagacattgtcaggtggg 25540653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 10178 - 10209
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  10178 gccgatccgggcggaagacattgtcaggtggg 10209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 17216 - 17247
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  17216 gccgatccgggcggaagacattgtcaggtggg 17247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 28739 - 28770
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  28739 gccgatccgggcggaagacattgtcaggtggg 28770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 37942 - 37911
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  37942 gccgatccgggcggaagacattgtcaggtggg 37911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 45791 - 45760
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  45791 gccgatccgggcggaagacattgtcaggtggg 45760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 58516 - 58485
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  58516 gccgatccgggcggaagacattgtcaggtggg 58485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 62813 - 62782
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  62813 gccgatccgggcggaagacattgtcaggtggg 62782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 77206 - 77175
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  77206 gccgatccgggcggaagacattgtcaggtggg 77175  T

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Target: scaffold0052 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 12900 - 12869
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  12900 gccgatccgggcggaagacattgtcaggtggg 12869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 21713 - 21682
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  21713 gccgatccgggcggaagacattgtcaggtggg 21682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 34261 - 34292
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  34261 gccgatccgggcggaagacattgtcaggtggg 34292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 39115 - 39146
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  39115 gccgatccgggcggaagacattgtcaggtggg 39146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 44109 - 44078
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  44109 gccgatccgggcggaagacattgtcaggtggg 44078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 58788 - 58757
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  58788 gccgatccgggcggaagacattgtcaggtggg 58757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 67326 - 67295
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  67326 gccgatccgggcggaagacattgtcaggtggg 67295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Complemental strand, 74357 - 74326
Alignment:
Q  499 gccgatccgggcggaagacattgtcaggtggg 530  Q
    ||||||||||||||||||||||||||||||||    
T  74357 gccgatccgggcggaagacattgtcaggtggg 74326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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