View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_6 (Length: 515)
Name: NF15531_low_6
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 20 - 505
Target Start/End: Original strand, 43981252 - 43981737
Alignment:
| Q |
20 |
gctctcgaactccgccgcgaacaaagtcgattcctcttcgactatcaatggcggtttgaagtgttccaaactcgattcaccgattttgattttcttgttc |
119 |
Q |
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| T |
43981252 |
gctctcgaactccgccgcgaacaaagtcgattcctcttcgactatcaatggcggtttgaagtgttccaaactcgattcaccgattttgattttcttgttc |
43981351 |
T |
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| Q |
120 |
tttcataaagcgattcggaatgagcttgacgttttacatcgattagccatgtcattcgccaccggtaatcgctctgatattcgtcctctcttcgaccgtt |
219 |
Q |
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| T |
43981352 |
tttcataaagcgattcggaatgagcttgacgttttacatcgattagccatgtcattcgccaccggtaatcgctctgatattcgtcctctcttcgaccgtt |
43981451 |
T |
|
| Q |
220 |
atcatttcctcaactctatttatcgtcatcactccaatgctgaagatgaggttcaaatctcgctttaactttttacgtttatcttccattttctagcctt |
319 |
Q |
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| T |
43981452 |
atcatttcctcaactctatttatcgtcatcactccaatgctgaagatgaggttcaaatctcgctttaactttttacgtttatcttccattttctagcctt |
43981551 |
T |
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| Q |
320 |
ttcattcttcaactgtatgatgaacattttcattctcgaaattaacttaagattttgttactctatttaggtctaagtaactttagcgaagatatttcga |
419 |
Q |
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| T |
43981552 |
ttcattcttcaactgtatgatgaacattttcattctcgaaattaacttaagattttgttactctatttaggtctaagtaactttagcgaagatatttcga |
43981651 |
T |
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| Q |
420 |
ttttttctacatgtacagaatcaattgatttgcatgatatgcatctttgttaattttgtttaatttaatcgtatgttactattcat |
505 |
Q |
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| T |
43981652 |
ttttttctacatgtacagaatcaattgatttgcatgatatgcatctttgttaattttgtttaatttaatcgtatgttactattcat |
43981737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 31305004 - 31305068
Alignment:
| Q |
102 |
attttgattttcttgttctttcataaagcgattcggaatgagcttgacgttttacatcgattagc |
166 |
Q |
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| T |
31305004 |
attttgattttctcgttctttcaaaaagcgattgggaatgagcttgatgcgttgcatcgattagc |
31305068 |
T |
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