View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_7 (Length: 493)
Name: NF15531_low_7
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 49279771 - 49279306
Alignment:
| Q |
17 |
atattaggttatgcaattggaattgctcctaaacatgagctatttaagaagtatattgaaatggaattggagcttggtactacagatcgatgcaggaatt |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49279771 |
atattaggttatgcaattggaatcgctcctaaacatgagctatttaagaagtatattgaaatggaattggagcttggtaatacagatcgatgcaggaatt |
49279672 |
T |
|
| Q |
117 |
tgtatgtaaagtatctggagtggtcagctaaaaaatgcaatgcatggagcaagtatgcagaagagttggagagatcttcatcagagactgaacgagctag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49279671 |
tgtatgtaaagtatctggagtggtcagctaaaaaatgcaatgcatggagcaagtatgcagaagagttggagagatcttcatctgagactgaacgagctag |
49279572 |
T |
|
| Q |
217 |
agcaatatttgagtctgtaattgctcgaccagagcctgagttgttatggaaggcattccttgattttgagactgctaagattgaatttgagagaacaaga |
316 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279571 |
agcaatatttgagtctgcaattgctcgaccagagcatgagttgttatggaaggcattccttgattttgagactgctaagattgaatttgagagaacaaga |
49279472 |
T |
|
| Q |
317 |
gtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctacttataaggcgggtttag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49279471 |
gtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctacttataaggcgggtttag |
49279372 |
T |
|
| Q |
417 |
aacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctctgagttacatcacat |
482 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49279371 |
aacaaaagaaacaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcacat |
49279306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 49276214 - 49275740
Alignment:
| Q |
17 |
atattaggttatgcaattggaattgctcctaaacatgagctatttaagaagtatattgaaatggaattggagcttggtactacagatcgatgcaggaatt |
116 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |
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| T |
49276214 |
atattagattatgctattggaaaggctcctaaacataagctatttaagaagtatatagaaatggaattggagcttggtaatacagatcgatgcaggaaat |
49276115 |
T |
|
| Q |
117 |
tgtatgtaaagtatctggagtggtcagctaaaaaatgcaatgcatggagcaagtatgcagaagagttggagagatcttcatcagagactgaacgagctag |
216 |
Q |
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|||||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
49276114 |
tgtatgtaaattatctggagtggtcagctgacaaatgcaaagcatggagcaagtatgcagaagatttggagagatctttatcagagactgaacgagctag |
49276015 |
T |
|
| Q |
217 |
agcaatatttgagtctgtaattgctcgaccaga---------gcctgagttgttatggaaggcattccttgattttgagactgctaagattgaatttgag |
307 |
Q |
| |
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||||||||||||||||| ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
49276014 |
agcaatatttgagtctgcaattgctcgaccagaattggtaaagcaagagttgttttggaaggcattccatgattttgagactgctaagtgtgaatttgag |
49275915 |
T |
|
| Q |
308 |
agaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctacttataagg |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49275914 |
agaacaagagtgcattatgaaagaattcctaatcgtaaaaagcagcacttggagatatggataagctatgcagagtttgaagcaacagctacttataaag |
49275815 |
T |
|
| Q |
408 |
cgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctctgagttacatcacat |
482 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49275814 |
cgggtttagaacaaaagaagcaatgcattgagcatgccagaagggtgtttgaggaagctgtgagttacatcacat |
49275740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 2289186 - 2289017
Alignment:
| Q |
57 |
tatttaagaagtatattgaaatggaattggagcttggtactacagatcgatgcaggaatttgtatgtaaagtatctggagtggtcagctaaaaaatgcaa |
156 |
Q |
| |
|
|||||||||||||||| || || ||| || ||||||||| || |||| ||||||| || | |||| ||||||| ||||||||||| || |||| ||| | |
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| T |
2289186 |
tatttaagaagtatatagagatagaactgcagcttggtaatatagatagatgcagaaaactatatgaaaagtatttggagtggtcacctgaaaattgcta |
2289087 |
T |
|
| Q |
157 |
tgcatggagcaagtatgcagaagagttggagagatcttcatcagagactgaacgagctagagcaatatttgag |
229 |
Q |
| |
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|||||||||||||||||||||| | |||||||||| | | |||||||||||||||||||||||||||||| |
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| T |
2289086 |
tgcatggagcaagtatgcagaa---ctagagagatctttagctgagactgaacgagctagagcaatatttgag |
2289017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 34789750 - 34789919
Alignment:
| Q |
57 |
tatttaagaagtatattgaaatggaattggagcttggtactacagatcgatgcaggaatttgtatgtaaagtatctggagtggtcagctaaaaaatgcaa |
156 |
Q |
| |
|
|||||||||||||||| || || ||| || ||||||||| || |||||||||||| || | |||| ||| ||| |||||||| || || |||| ||| | |
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| T |
34789750 |
tatttaagaagtatatagagatagaactgcagcttggtaatatagatcgatgcagaaaactatatgaaaaatatttggagtggacacctgaaaattgcta |
34789849 |
T |
|
| Q |
157 |
tgcatggagcaagtatgcagaagagttggagagatcttcatcagagactgaacgagctagagcaatatttgag |
229 |
Q |
| |
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||||||| |||||||||||||| | |||||||||| | | ||||| |||||||||||||||||||||||| |
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| T |
34789850 |
tgcatggtgcaagtatgcagaa---ctagagagatctttagctgagaccgaacgagctagagcaatatttgag |
34789919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 398
Target Start/End: Original strand, 34790146 - 34790274
Alignment:
| Q |
267 |
aggcattccttgattttgagactgctaagattgaatttgagagaacaagagtgcattatgaaagaattcctaataggaaaaagcagcacttggagatatg |
366 |
Q |
| |
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|||||| | |||||||||| |||| | || ||||||||||||| ||||||||| ||||||||| ||| | || | | |||||| |||| || |||| |
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| T |
34790146 |
aggcatacgttgattttgaaactgttgagtgtgaatttgagagagcaagagtgctttatgaaaggcttcttgatcgaacaaagca---cttgaaggtatg |
34790242 |
T |
|
| Q |
367 |
gataagctatgcagagtttgaagcaacagcta |
398 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
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|
| T |
34790243 |
gatgagctatgcagagtttgaagcaacagcta |
34790274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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