View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15531_low_8 (Length: 482)
Name: NF15531_low_8
Description: NF15531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15531_low_8 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Complemental strand, 8331161 - 8330715
Alignment:
| Q |
15 |
cataggcaggttttgctttggactgttcagaaaccatgttgctccatcctgctcacaagcaagtctcaaaatattcaactatagtatagtaatatagaat |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8331161 |
cataggcaggttttgctttggactgttcagaaaccatgttgctccatcctgctcacaagcaagtctcaaaatattcaactatagtttagtaatatagaat |
8331062 |
T |
|
| Q |
115 |
taagttccttaatttgcatcaataatatagcattatttatattagattttgtaaaggttacttgttataaagaccattcatatttgatattagaagccat |
214 |
Q |
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| T |
8331061 |
taagttccttaatttgcatcaataatatagcataatttatattagattttgtaaaggatacttgttataaagaccattcatatttgatattagaagccat |
8330962 |
T |
|
| Q |
215 |
tgagacttagatagtaggattttataaattgtgtatgattaaaatattgttgcctcannnnnnnnctttcctcaattatcatgcacnnnnnnnggaagaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
8330961 |
tgagacttagatagtaggattttataaattgtgtatgattaaaatattgttgcctcattttttttctttcatcaattatcatgcactttttttggaagaa |
8330862 |
T |
|
| Q |
315 |
tttatcagtcacttgtgttatgtgttaatgtttttggttctagtagtctagtgttcaagttcacacatattaaatgtgaagaaatgtggtgtccgaagtt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8330861 |
tttatcagtcacttgtgttatgtgttaatgtttttggttctagtagtctagtgttcaagttcacacatattaaatgtgaagaaatgtggtgtctgaagtt |
8330762 |
T |
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| Q |
415 |
cgaagttgaactccatctatacatatattatgcaatgtccctatcta |
461 |
Q |
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| T |
8330761 |
cgaagtcgaactccatctatatatatattatgcaatgtccctatcta |
8330715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 8337839 - 8337761
Alignment:
| Q |
15 |
cataggcaggttttgctttggactgttcagaaaccatgttgctccatcctgctcacaagcaagtctcaaaatattcaac |
93 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||| |||| |
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| T |
8337839 |
cataggcaggttttgctttggactgttcaaaaaccatgttgctccatcctgcacacaacaaagactcaaaatatgcaac |
8337761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 8342286 - 8342208
Alignment:
| Q |
15 |
cataggcaggttttgctttggactgttcagaaaccatgttgctccatcctgctcacaagcaagtctcaaaatattcaac |
93 |
Q |
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| T |
8342286 |
cataggaaggttttgctttggactgttcaaaaaccatgttgctccatcctgcacacaacaaagactcaaaatattcaac |
8342208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0595 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 6576 - 6498
Alignment:
| Q |
15 |
cataggcaggttttgctttggactgttcagaaaccatgttgctccatcctgctcacaagcaagtctcaaaatattcaac |
93 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
6576 |
cataggaaggttttgctttggactgttcagaaaccatgttgctccatcctgcacacaacaaagactcaaaatattcaac |
6498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 8089219 - 8089265
Alignment:
| Q |
372 |
agttcacacatattaaatgtgaagaaatgtggtgtccgaagttcgaa |
418 |
Q |
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| T |
8089219 |
agttcacacatattaaatgtggagaaatggagtgtccgaagttcgaa |
8089265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 34459321 - 34459277
Alignment:
| Q |
374 |
ttcacacatattaaatgtgaagaaatgtggtgtccgaagttcgaa |
418 |
Q |
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| T |
34459321 |
ttcacacattttaaatgtgaagaagtgtggtgtccgatgttcgaa |
34459277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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