View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_high_10 (Length: 386)
Name: NF15532_high_10
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 34221801 - 34222170
Alignment:
| Q |
1 |
ttcaattcaaccaagtacacatagttttctatgtccaaaatgaggacacgaattctagcttttatccatgcaatcatgtccccttcgaaacctttgatcc |
100 |
Q |
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| T |
34221801 |
ttcaattcaaccaagtacacatagttttctatgtccaaaatgaggacacgaattctagcttttatccatgcaatcatgtccccttcccaacctttgatcc |
34221900 |
T |
|
| Q |
101 |
tcttaacttttcctatatgttggtcccttgagaccccactcccatgatctgcaacaacttgtcccattaccaaacaaattagtcactaatcataaatagt |
200 |
Q |
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| T |
34221901 |
tcttaacttttcctatatgttggtcccttaagaccccactcccatgatcagcaacaacttgtcccattaacaaacaaattagtcactaatcataaatagt |
34222000 |
T |
|
| Q |
201 |
ttggatgcatttaacttatgtaagaaactgttcataggaatcgttttgatgcaacatggaaaattcaatacactcttctcttacaaacaacaatattatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34222001 |
ttggatgcatttaacttatgtaagaaactgttcataggaattattttgatgcaacatggaaaattcaatacactcttctcttacaaacaacaatattatc |
34222100 |
T |
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| Q |
301 |
tattgtaatattagacccaataaacaacacaagttctaagcatcaagatgcttaaatggatcatgttttt |
370 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34222101 |
tattgtaatagtagacccaataaacaacacaagttctaagcatcaagatgcttaaatggatcatgttttt |
34222170 |
T |
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