View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_high_11 (Length: 384)
Name: NF15532_high_11
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 36025171 - 36024983
Alignment:
| Q |
1 |
agcaatctctgtcacatatttttcaatccacgtacgtctttttgatatagtaccactttggattttgtaccgtcagatcaaaagcaattacaaatctcag |
100 |
Q |
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| T |
36025171 |
agcaatctctgtcacatatttttcaatccacgt----ctttttgatatagaaccactttggattttgtaccgtcagatcaaaagcaattacaaatctcag |
36025076 |
T |
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| Q |
101 |
cgatctttgattctttaacctatgctcttgttagcattttccaaatgt-ttttattagcatttgaaatatcaaatggttcgatctaaatattt |
192 |
Q |
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| T |
36025075 |
cgatctttgattctttaacctgtgctcttgttagcattttccaaatgttttttattagcatttgaaatatcaaatggttcgatctaaatattt |
36024983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 231 - 371
Target Start/End: Complemental strand, 36024927 - 36024787
Alignment:
| Q |
231 |
ataactggtagacttgaaagtaagaatgcatgcaagcaataattaccacccttcataaaacatttgaagtgattatcaatcgggttgcgtatatacatta |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36024927 |
ataactggtagacttgaaagtaagaatgcatgcaagcaataattaccacccttcataaaacatttgaagtgattataaatcgggttgcgtatatacatta |
36024828 |
T |
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| Q |
331 |
atacgagtaacaatggaagatccggtcaaaataatatctct |
371 |
Q |
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| T |
36024827 |
atacgagtaacaatggaagatccggtcaaaataatatctct |
36024787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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