View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_high_13 (Length: 351)
Name: NF15532_high_13
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_high_13 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 41081531 - 41081187
Alignment:
| Q |
13 |
agtttgaatatggaatctattttttagaaaaaggtagtacgttttatcagaaacttgcacgaa----gtaaattgcaagatggatttgataatggtcggt |
108 |
Q |
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| T |
41081531 |
agtttgaatatggaatctattttttagaaaaaggtagtacgttttatcagaaatttgcacgaattaagtaaattgcaagatggatttgataatggtcggt |
41081432 |
T |
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| Q |
109 |
ggta-------gaagaagaaatcatcaaacaccatgttgcatcgtattattgaaaggacgtgtaaattgagnnnnnnnccctttctcttttgcatcaatt |
201 |
Q |
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| T |
41081431 |
gggacttgggagaagaagaaatcatcaaacaccatgttgcatcgtattattgaaaggacgtgtaaattgagtttttttccctttctcttttgcatcaatt |
41081332 |
T |
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| Q |
202 |
aatgcaatcttagttgaacattaatatagctagcaactctctcaattaaattttttaactttaatatacatttaatttgttaaaaatcagtactttacag |
301 |
Q |
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| T |
41081331 |
aatgcaatcttagttgaacattaatatagc----aactctctcaattaaattttttaactttaatatacatttaatttgttaaaaatcagtactttacag |
41081236 |
T |
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| Q |
302 |
aaaacccttaatttgtcatagtgcaagagtttacttcttctcactcgact |
351 |
Q |
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| T |
41081235 |
aaaacccttaatttgtcatagtgcaagagtttacttcttc-cactcgact |
41081187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 98663 - 98562
Alignment:
| Q |
13 |
agtttgaatatggaatctattttttagaaaaaggtagtacgttttatcagaaacttgcacg----aagtaaattgcaagatggatttgataatggtcggt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
98663 |
agtttgaatatggaatctattttttagaaaaaggtagtacgttttatcagaaatttgcacgaattaagtaaattgcaagatggatttgataatggtcggt |
98564 |
T |
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| Q |
109 |
gg |
110 |
Q |
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|| |
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| T |
98563 |
gg |
98562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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