View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15532_high_6 (Length: 449)

Name: NF15532_high_6
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15532_high_6
NF15532_high_6
[»] chr5 (14 HSPs)
chr5 (90-362)||(30478585-30478857)
chr5 (233-354)||(30745269-30745390)
chr5 (233-354)||(30681608-30681729)
chr5 (19-89)||(30478461-30478531)
chr5 (233-347)||(30717872-30717986)
chr5 (242-354)||(30055505-30055618)
chr5 (393-441)||(30479084-30479132)
chr5 (153-236)||(30055387-30055469)
chr5 (153-236)||(30681756-30681838)
chr5 (153-236)||(30718011-30718093)
chr5 (90-139)||(30431563-30431612)
chr5 (402-441)||(30341067-30341106)
chr5 (395-441)||(30717769-30717815)
chr5 (409-441)||(30396714-30396746)
[»] chr4 (1 HSPs)
chr4 (304-350)||(20303625-20303671)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 90 - 362
Target Start/End: Original strand, 30478585 - 30478857
Alignment:
Q  90 tcaagatgagaaaaaccacaaaaattgtgcataaccgtgtattctttggtacaatcgttcaattaataagtatttcagagatttgagagattgagaattc 189  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30478585 tcaagatgagaaaaaccacaaaaattgtgcataaccatgtattctttggtacaatcgttcaattaataagtatttcagagatttgagagattgagaattc 30478684  T
Q  190 tattaactttgttttatgtcagatcctaattattgtcatgaattattcatagcaagttcatttactgaacagataagaaacaagaatttaaaataaaata 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30478685 tattaactttgttttatgtcagatcctaattattgtcatgaattattcatagcaagttcatttactgaacagataagaaacaagaatttgaaataaaata 30478784  T
Q  290 aggatgagttcttaaatatatttggtaaaaactaaattgtgaaggtaatcaatattataaatccttaagatga 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30478785 aggatgagttcttaaatatatttggtaaaaactaaattgtgaaggtaatcaatattataaatccttaagatga 30478857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 233 - 354
Target Start/End: Original strand, 30745269 - 30745390
Alignment:
Q  233 tattcatagcaagttcatttactgaacagataagaaacaagaatttaaaataaaataaggatgagttcttaaatatatttggtaaaaactaaattgtgaa 332  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||  || |||| |||||||    
T  30745269 tatttataacaagttcacttactgaacagataagaaacaagaatttgaaataaaacaaggatgagttcttaaatatattcagtggaagctaatttgtgaa 30745368  T
Q  333 ggtaatcaatattataaatcct 354  Q
    |||||||||||||||| |||||    
T  30745369 ggtaatcaatattatatatcct 30745390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 30681729 - 30681608
Alignment:
Q  233 tattcatagcaagttcatttactgaacagataagaaacaagaatttaaaataaaataaggatgagttcttaaatatatttggtaaaaactaaattgtgaa 332  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||  || |||| ||| |||    
T  30681729 tatttataacaagttcacttactgaacagataagaaacaagaatttgaaataaaataaggatgagttcttaaatatattcagtggaagctaatttgcgaa 30681630  T
Q  333 ggtaatcaatattataaatcct 354  Q
    | |||||||||||||| |||||    
T  30681629 gttaatcaatattatatatcct 30681608  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 30478461 - 30478531
Alignment:
Q  19 gcctcctctccacaagctactacaactcacagcagaagtgtcactatttacatcactgcattacctttttg 89  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30478461 gcctcctatccacaagctactacaactcacagcagaagtgtcactatttacatcactgcattacctttttg 30478531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 233 - 347
Target Start/End: Complemental strand, 30717986 - 30717872
Alignment:
Q  233 tattcatagcaagttcatttactgaacagataagaaacaagaatttaaaataaaataaggatgagttcttaaatatatttggtaaaaactaaattgtgaa 332  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||  || |||| |||||||    
T  30717986 tatttataacaagttcacttactgaacagataagaaacaagaatttgaaataaaacaaggatgagttcttaaatatattcagtggaagctaatttgtgaa 30717887  T
Q  333 ggtaatcaatattat 347  Q
    || ||||||||||||    
T  30717886 ggaaatcaatattat 30717872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 30055505 - 30055618
Alignment:
Q  242 caagttcatttactgaacagataagaaacaagaatttaaaataaaataaggatgagttcttaaatatatttggtaaaaactaaattgtgaaggtaatc-a 340  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||  || |||| |||||||||||||| |    
T  30055505 caagttcacttactgaacagataagaaacaagaatttgaaataaaacaaggatgagttcttaaatatattcagtggaagctaatttgtgaaggtaatcaa 30055604  T
Q  341 atattataaatcct 354  Q
    |||||||| |||||    
T  30055605 atattatatatcct 30055618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 30479084 - 30479132
Alignment:
Q  393 attgataatttgtgccttgtttattgaattctttgtctggtttcatttc 441  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  30479084 attgataatttgtgccttgtttattgaattctttgtgtggttacatttc 30479132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 30055387 - 30055469
Alignment:
Q  153 taataagtatttcagagatttgagagattgagaattctattaactttgttttatgtcagatcctaattattgtcatgaattatt 236  Q
    ||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||  |||||| || || ||| ||||||||    
T  30055387 taataagcatttcagag-tttgagagattaagaattctattgactttgttttatgtcgaatcctagttcttatcacgaattatt 30055469  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 30681838 - 30681756
Alignment:
Q  153 taataagtatttcagagatttgagagattgagaattctattaactttgttttatgtcagatcctaattattgtcatgaattatt 236  Q
    ||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||  |||||| || || ||| ||||||||    
T  30681838 taataagcatttcagag-tttgagagatcgagaattctattgactttgttttatgtcgaatcctagttcttatcacgaattatt 30681756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 30718093 - 30718011
Alignment:
Q  153 taataagtatttcagagatttgagagattgagaattctattaactttgttttatgtcagatcctaattattgtcatgaattatt 236  Q
    ||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||  |||||| || || ||||||| ||||    
T  30718093 taataagcatttcagag-tttgagagatcgagaattctattgactttgttttatgtcgaatcctagttcttatcatgaaatatt 30718011  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 30431563 - 30431612
Alignment:
Q  90 tcaagatgagaaaaaccacaaaaattgtgcataaccgtgtattctttggt 139  Q
    |||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  30431563 tcaagatgagaaaaaccaaataaattgtgcataaccatgtattctttggt 30431612  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 30341106 - 30341067
Alignment:
Q  402 ttgtgccttgtttattgaattctttgtctggtttcatttc 441  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  30341106 ttgtgccttgtttattgaattctttgtctggttacatttc 30341067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 30717815 - 30717769
Alignment:
Q  395 tgataatttgtgccttgtttattgaattctttgtctggtttcatttc 441  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||    
T  30717815 tgataacttgtgccatgtttattgaattctttgtctggttacatttc 30717769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 30396714 - 30396746
Alignment:
Q  409 ttgtttattgaattctttgtctggtttcatttc 441  Q
    |||||||||||||||||||||||||| ||||||    
T  30396714 ttgtttattgaattctttgtctggttacatttc 30396746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 20303671 - 20303625
Alignment:
Q  304 aatatatttggtaaaaactaaattgtgaaggtaatcaatattataaa 350  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  20303671 aatatttttggtaaaaactaatttgtgaaggtaatcaatattataaa 20303625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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