View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_1 (Length: 679)
Name: NF15532_low_1
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 1 - 660
Target Start/End: Complemental strand, 45528173 - 45527514
Alignment:
| Q |
1 |
gtggtgttgacggaaaaagacaagtcgacaaagtcattgacaaatgtgcttcaatgcaggtatctgtttttaatgattccaatcttgtggtactaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45528173 |
gtggtgttgacggaaaaagacaagtcgacaaagtcattgacaaatgtgcttcaatgcaggtatctgtttttaatgattccaatcttgtggtactaaaata |
45528074 |
T |
|
| Q |
101 |
acttctatgttggttgtttatatagtctctttgaacatttgaatttccttctatgtatcttgtgggttgaatcttcatatttctaaaatttccgtattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45528073 |
acttctatgttggttgtttatatagtctctttgaacatttgaatttccttctatgtatcttgtgggttgaatcttcatatttctaaaatttccgtattta |
45527974 |
T |
|
| Q |
201 |
atctgtctttcttgaacttcagaatttgcgtgaagcaattggtacctatcgcaatagcattctgcgacagccagatgagatgaaaaaggaggcatcgctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527973 |
atctgtctttcttgaacttcagaatttgcgtgaagcaattggtacctatcgcaatagcattctgcgacagccagatgagatgaaaaaggaggcatcgctt |
45527874 |
T |
|
| Q |
301 |
tccttttttgtggagtacttggagagatactactttttaatatgttttgccgtgtacattaattcagaaagggatatactcctttctagtaccgctggtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527873 |
tccttttttgtggagtacttggagagatactactttttaatatgttttgccgtgtacattaattcagaaagggatatactcctttctagtaccgctggtc |
45527774 |
T |
|
| Q |
401 |
aaagtagtttttccaattggatgagagcaaggcctgaactttacagcattattcgcaggttaaaattttaataactttgaggtctatgtttattaatttt |
500 |
Q |
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| T |
45527773 |
aaagtagtttttccaattggatgagagcaaggcctgaactttacagcattattcgcaggttaaaattttaataactttgaggtctatgtttattaatttt |
45527674 |
T |
|
| Q |
501 |
cttttctgatttctcttcattaggcctgtggatgtatatctattgagctaaacgagtttagctagtgaactgtatgtctcgcaatgatcattaatattac |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527673 |
cttttctgatttctcttcattaggcctgtggatgtatatctattgagctaaacgagtttagctagtgaactgtatgtctcgcaatgatcattaatattac |
45527574 |
T |
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| Q |
601 |
tgaattgagcttgctttgaccttcagaaataatctttcatatgtagtccgaggtcctgat |
660 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45527573 |
tgaactgagctcgctttgaccttcagaaataatctttcatatgtagtccgaggtcctgat |
45527514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 38075125 - 38075263
Alignment:
| Q |
232 |
gaagcaattggtacctatcgcaatagcattctgcgacagccagatgagatgaaaaaggaggcatcgctttccttttttgtggagtacttggagagatact |
331 |
Q |
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|||||||||| || ||||| ||||| ||| |||| || |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
38075125 |
gaagcaattgccacttatcgtaatagtattttgcggcaaccagatgagatgaaaagggaggcatcactttctttttttgtggagtacttggagagatact |
38075224 |
T |
|
| Q |
332 |
actttttaatatgttttgccgtgtacattaattcagaaa |
370 |
Q |
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||||||| ||||||||| | || ||||| ||||||||| |
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| T |
38075225 |
actttttgatatgttttactgtatacatacattcagaaa |
38075263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38074807 - 38074875
Alignment:
| Q |
1 |
gtggtgttgacggaaaaagacaagtcgacaaagtcattgacaaatgtgcttcaatgcaggtatctgttt |
69 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
38074807 |
gtggtgttgacgggaaaagacaagttgacaaagtcattgacaagtgtgcatcaatgcaggtatctgttt |
38074875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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