View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_12 (Length: 373)
Name: NF15532_low_12
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 149 - 357
Target Start/End: Complemental strand, 43417111 - 43416883
Alignment:
| Q |
149 |
cttcgcgtgcgcatcagaatcccaccaaacagtacatgattgccttttacttatgagtcatacgattttgaaattttagttgatccccttccatgacctg |
248 |
Q |
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| T |
43417111 |
cttcgcgtgcgcatcagaatcccaccaaacagtacatgattgccttttacttacgagtcatacgattttgaaattttagttgatccccttccatgacctg |
43417012 |
T |
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| Q |
249 |
tgctgtgggagaacttcatat--------------------atcaaatattgttgacaaatgagatcaaaatagtttataattatattattcaatactgt |
328 |
Q |
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| T |
43417011 |
tgctgtgggagaacttcatatatcatatattgatttcatatatcaaatattgttgacaaatgagatcaaaatagtttataattatattattcaatattgt |
43416912 |
T |
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| Q |
329 |
ttctattattttagatttattcatgtttc |
357 |
Q |
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| T |
43416911 |
ttctattattttagatttattcatgtttc |
43416883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 43417255 - 43417132
Alignment:
| Q |
1 |
taaattaacttggtgtggtcacatgtgaagaatgtttgttattgaaaaggacagaaagcgttatatagtactttgtttaatgttttgccatttgcaagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43417255 |
taaattaacttggtgtggtcacatgtgaagaatgtttgttcttgaaaaggacagaaagcgttatatagtactttgtttaatgttttgccatttgcaagtt |
43417156 |
T |
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| Q |
101 |
tgttaagcaatgatcattcttgag |
124 |
Q |
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| T |
43417155 |
tgttaagcaatgatcattcttgag |
43417132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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