View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_15 (Length: 302)
Name: NF15532_low_15
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_15 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 6973069 - 6972784
Alignment:
| Q |
17 |
actttgtattatctccatcaagagtctctccacttccatcttcaatgacttaatctctttattataagtactaggaaaatacctacatgcataatcaaat |
116 |
Q |
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| T |
6973069 |
actttgtattatctccatcaagagtctctccacttccatcttcaatgacttaatctctttattataagtactaggaaaatacctacatgcataatcaaat |
6972970 |
T |
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| Q |
117 |
ttaaataaatacatagacttaattcatatacactacactatatcaaacaatcgtaatcgttatatgaagaataacttttttaataatctgtaacaaacga |
216 |
Q |
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| T |
6972969 |
ttaaataaatacatagacttaattcatatacactacactatatcaaacaatcgtaatcgttatatgaagaataacttttttaataatctgtaacaaacga |
6972870 |
T |
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| Q |
217 |
gccctatatccgaaacaatcttgatatttaggtttaacaatttacttatcaaaagatgaagaaacaatgttacaaggtgataaatt |
302 |
Q |
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| T |
6972869 |
gccctatatccgaaacaatcttgatatttaggtttaacaatttacttatcaaaagatgaagaaacaatgttacaatgtgataaatt |
6972784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 6972760 - 6972663
Alignment:
| Q |
206 |
gtaacaaacgagccctatatccgaaacaatcttgatattt-aggtttaacaatttacttatcaaaagatgaagaaacaatgttacaaggtgataaatt |
302 |
Q |
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| T |
6972760 |
gtaacaaatgagccctatatccgaaacaattttgatattttaggtttaacaatgtacttatcaaaagatgaagaaacaatgttacaatgtgatcaatt |
6972663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 1268039 - 1267990
Alignment:
| Q |
18 |
ctttgtattatctccatcaagagtctctccacttccatcttcaatgactt |
67 |
Q |
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| T |
1268039 |
ctttgtattatttccattaataatctctccacttccatcttcaatgactt |
1267990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 48805473 - 48805502
Alignment:
| Q |
192 |
ttttttaataatctgtaacaaacgagccct |
221 |
Q |
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| T |
48805473 |
ttttttaataatctgtaacaaacgagccct |
48805502 |
T |
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