View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_2 (Length: 529)
Name: NF15532_low_2
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 50968117 - 50967624
Alignment:
| Q |
20 |
agctaaaacgagtaattgtataatgcatcaccacgtctaattcaaatccaaaagaagatacacatggtaagaaagaggggaagaagatgacacaaatata |
119 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50968117 |
agctaaaacaagtaattgtataatgcatcaccacgtctaattcaaatccaaaagaagatatacatggtaagaaagaggggaagaagatgacacaaatata |
50968018 |
T |
|
| Q |
120 |
ggtgaatattcgtctttgcgacaaactaatcaatcggttaagatacacctataacctaattcatagattatcttacctcgataaaaataattaatgaaat |
219 |
Q |
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|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50968017 |
ggtgaatatttgtctttacaacaaactaatcaatcggttaagatacacctataacctaattcatagattatcttacctcgataaaaataattaatgaaat |
50967918 |
T |
|
| Q |
220 |
taccatacaactaaatggacttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatccaaattaaaataacatttt |
319 |
Q |
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|||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50967917 |
taccctacaactaa-tggatttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatccaaattaaaataacatttt |
50967819 |
T |
|
| Q |
320 |
tccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatctgagctggatataacttggattaccatgcataatcatgta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50967818 |
tccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatccgagctggatataacttggattaccatgcataatcatgta |
50967719 |
T |
|
| Q |
420 |
agctcttgatgagtttgttgtatgtaataa-aaaagtatgtgctacctctgtatatagagagtttacatcacccaaaagtttcttaccatataag |
513 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50967718 |
agctcttgatgagtttgttgtatgtaataaaaaaagtatgtgctacctctgtatatagagagtttacatcacccaaaagtttcttactatataag |
50967624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 51071252 - 51070759
Alignment:
| Q |
20 |
agctaaaacgagtaattgtataatgcatcaccacgtctaattcaaatccaaaagaagatacacatggtaagaaagaggggaagaagatgacacaaatata |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51071252 |
agctaaaacaagtaattgtataatgcatcaccacgtctaattcaaatccaaaagaagatatacatggtaagaaagaggggaagaagatgacacaaatata |
51071153 |
T |
|
| Q |
120 |
ggtgaatattcgtctttgcgacaaactaatcaatcggttaagatacacctataacctaattcatagattatcttacctcgataaaaataattaatgaaat |
219 |
Q |
| |
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|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071152 |
ggtgaatatttgtctttacaacaaactaatcaatcggttaagatacacctataacctaattcatagattatcttacctcgataaaaataattaatgaaat |
51071053 |
T |
|
| Q |
220 |
taccatacaactaaatggacttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatccaaattaaaataacatttt |
319 |
Q |
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|||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51071052 |
taccctacaactaa-tggatttgttttgattcttgaagttaatagcatgtagacaaattaaataacatttattgtataatccaaattaaaataacatttt |
51070954 |
T |
|
| Q |
320 |
tccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatctgagctggatataacttggattaccatgcataatcatgta |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
51070953 |
tccaaatttcgggtatgtcatcgacataggtctaattgttcttttggggtattatttatccgagctggatataacttggattaccatgcataatcatgta |
51070854 |
T |
|
| Q |
420 |
agctcttgatgagtttgttgtatgtaataa-aaaagtatgtgctacctctgtatatagagagtttacatcacccaaaagtttcttaccatataag |
513 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51070853 |
agctcttgatgagtttgttgtatgtaataaaaaaagtatgtgctacctctgtatatagagagtttacatcacccaaaagtttcttactatataag |
51070759 |
T |
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