View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_22 (Length: 250)
Name: NF15532_low_22
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6972622 - 6972384
Alignment:
| Q |
1 |
tatccgaaacaatatgatcgatgttacaatgtcacatcatatgttgaatcacacacaaatataatatacatacctgcttccaggaagggaatgttggcta |
100 |
Q |
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| T |
6972622 |
tatccgaaacaatatgatcgatgttacaatgtcacaacatatgttgaatcgcacacaaatattatatacatacctgcttccaggaagggaatgttggcga |
6972523 |
T |
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| Q |
101 |
gttgcttgagcacaaagaccttggagttgtgtgaggaggtgaaatatttgctttccctttttgtagcttgtaccaaactcagttttagagataatatctg |
200 |
Q |
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| T |
6972522 |
gttgcttgagcacaaagaccttggagttgtgtgaggaggtgaaatatttgctttccctttttgtagcttgtactaaactcagttttagagataatatctg |
6972423 |
T |
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| Q |
201 |
cagtgagtttagtgaagtattctccaatttccacttcat |
239 |
Q |
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| T |
6972422 |
cagtgagtttagtgaagtattctccaatttccacttcat |
6972384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 1267342 - 1267201
Alignment:
| Q |
71 |
tacctgcttccaggaagggaatgttggctagttgcttgagcacaaagaccttggagttgtgtgaggaggtgaaatatttgctttccctttttgtagcttg |
170 |
Q |
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| T |
1267342 |
tacctgctgccaggaaagcaaaggtggcgacttgcttgagcacaaagagtctggagaactgtgaggagatggaatattttccttcccttttggtagcttg |
1267243 |
T |
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| Q |
171 |
taccaaactcagttttagagataatatctgcagtgagtttag |
212 |
Q |
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| T |
1267242 |
caccaaactcagttctagagataatatctgcagtaagtttag |
1267201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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