View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_4 (Length: 496)
Name: NF15532_low_4
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 29049217 - 29049634
Alignment:
| Q |
19 |
accatattatgtgttagtgttacatattttcgtaaacattaatcaaatttgaaattttagtgatcatattattgaaattataannnnnnngcatgatata |
118 |
Q |
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| T |
29049217 |
accatattatgtgttagtgttacatattttcgtaaacattaatcaaatttgaaattttagtgatcatattattgaagttataaatgttttgcatgatata |
29049316 |
T |
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| Q |
119 |
ataggtttgtcaaaggttggggaaagagaatggtattttttcgtgccaagggacaaaaaacatggtagtggaggaaggcctaaccgcacaactgaaaaag |
218 |
Q |
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| T |
29049317 |
ataggtttgtcaaaggttggggaaagagaatggtattttttcgtgccaagggacaaaaaacatggtagtggaggaaggcctaaccgcacaactgaaaaag |
29049416 |
T |
|
| Q |
219 |
gtttctggaaagccaccggttcggaccggaaaatcgtgacgttatcggatccgaaacgcataattgggttgaggaagacgttggttttctatgagggaag |
318 |
Q |
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| T |
29049417 |
gtttctggaaagccaccggttcggaccggaaaatcgtgacgttatcggatccgaaacgcataattgggttgaggaagacgttggttttctatgagggaag |
29049516 |
T |
|
| Q |
319 |
agctccaagaggaaccaagactgattgggttatgaatgaataccgtttacctgacaatagccccttacctaaggtattgtgtatatatctttcttcattt |
418 |
Q |
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| T |
29049517 |
agctccaagaggaaccaagactgattgggttatgaatgaataccgtttacctgacaatagccccttgcctaaggtattgtgtatatatctttcttcattt |
29049616 |
T |
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| Q |
419 |
gaatttgaactatatata |
436 |
Q |
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| T |
29049617 |
gaatttgaactatatata |
29049634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 29037081 - 29037326
Alignment:
| Q |
19 |
accatattatgtgttagtgttacatattttcgtaaacattaatcaaatttgaaattttagtgatcatattattgaaattataannnnnnngcatgatata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
29037081 |
accatattatgtgttagtgttacatattttcgtaaacattaatcaaatttgaaattttagtgatcatattattgaagttataaatgttttgcatgatata |
29037180 |
T |
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| Q |
119 |
ataggtttgtcaaaggttggggaaagagaatggtattttttcgtgccaagggacaaaaaacatggtagtggaggaaggcctaaccgcacaactgaaaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29037181 |
ataggtttgtcaaaggttggggaaagagaatggtattttttcgtgccaagggacaaaaaacatggtagtggaggaaggcctaaccgcacaactgaaaaag |
29037280 |
T |
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| Q |
219 |
gtttctggaaagccaccggttcggaccggaaaatcgtgacgttatc |
264 |
Q |
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| T |
29037281 |
gtttctggaaagccaccggttcggaccggaaaatcgtgacgttatc |
29037326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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