View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_7 (Length: 441)
Name: NF15532_low_7
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 11596850 - 11596670
Alignment:
| Q |
30 |
ctatttcgattgacgttacgaaagtttgcagaaaattgaattgaaatcaatattatggcgagtgctgcaatggtagaagatggtaacttcgaagatgacc |
129 |
Q |
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| T |
11596850 |
ctatttcgattgacgttacgaaagtttgcagaaaattgaattgaaatcaatattatggcgagtgctgcaatggtagaagatggtaacttcgaagatgacc |
11596751 |
T |
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| Q |
130 |
aattagctaatatgagcaccgacgatatcgtcagagcttctcgtcttctcgacaacgagattcgcatcctcaaggttcctc |
210 |
Q |
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| T |
11596750 |
aattagctaatatgagcaccgacgatatcgtcagagcttctcgtcttctcgacaacgagattcgcatcctcaaggttcctc |
11596670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 254 - 430
Target Start/End: Complemental strand, 11596630 - 11596454
Alignment:
| Q |
254 |
acttatgtaactttattcctgattttggttgcaggaagagttacagaggacgaatctggaacttgaatcgtataaagacaagattaaagaaaatcaggag |
353 |
Q |
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| T |
11596630 |
acttatgtaactttattcctgattttcgttacaggaagagttgcagaggaccaatctggaacttgaatcgtataaagacaagattaaagaaaatcaagag |
11596531 |
T |
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| Q |
354 |
aaaattaagcttaataaacaattaccctatctcgttggtaacattgttgaggtagctttctgtttctattcagtatt |
430 |
Q |
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| T |
11596530 |
aaaattaagcttaataaacaattaccctatctcgttggtaacattgttgaggtagctttctgtttctgttgagtatt |
11596454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 37080036 - 37080146
Alignment:
| Q |
99 |
atggtagaagatggtaacttcgaagatgaccaattagctaatatgagcaccgacgatatcgtcagagcttctcgtcttctcgacaacgagattcgcatcc |
198 |
Q |
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| T |
37080036 |
atggtagaagatgccaacttcgaagatgaccaattagcgaatatgagcaccgacgatatcgtcagagcttctcgtcttctcgacaacgagattcgcatcc |
37080135 |
T |
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| Q |
199 |
tcaaggttcct |
209 |
Q |
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| T |
37080136 |
tcaaggttcct |
37080146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 286 - 408
Target Start/End: Original strand, 37080261 - 37080383
Alignment:
| Q |
286 |
aggaagagttacagaggacgaatctggaacttgaatcgtataaagacaagattaaagaaaatcaggagaaaattaagcttaataaacaattaccctatct |
385 |
Q |
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| T |
37080261 |
aggaagagtcgcagaggacgaatctggagttggaatcgtataaagagaagattaaagagaatcaagagaaaattaagcttaataaacaattaccctatct |
37080360 |
T |
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| Q |
386 |
cgttggtaacattgttgaggtag |
408 |
Q |
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| T |
37080361 |
cgttggtaacattgttgaggtag |
37080383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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