View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15532_low_8 (Length: 428)
Name: NF15532_low_8
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15532_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 32 - 415
Target Start/End: Complemental strand, 30897707 - 30897324
Alignment:
| Q |
32 |
aattatgcatccaagatccactctccaccaaaccactcatgatgaactctgatctgatcatagcggtagtaattcgtctctgagctagtggtgaaataca |
131 |
Q |
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| T |
30897707 |
aattatgcatccaagatccactctccaccaaaccactcatgatgaactctgatctgatcatagcggtagtaattcgtctctgagctagtgctgaaataca |
30897608 |
T |
|
| Q |
132 |
cccaatagcaatggccctcttcagcagtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgag |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897607 |
cccaatagcaatggccctcttcagcagtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgag |
30897508 |
T |
|
| Q |
232 |
ttgaaattcatgaggattacgaacacgtggtggtgttggacgtagctcatatggataaatggtctctacaagaggtccagacttgtcctcaagcaaaaga |
331 |
Q |
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| T |
30897507 |
ttgaaattcatgaggattacgaacacgtggtggtgttggacgtagctcatatggataaatggtctctacaagaggtccagacttgtcctcaagcaaaaga |
30897408 |
T |
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| Q |
332 |
ttcttgtattgaaccatgtattgtccattttggaggcgtgaaacaactctggctttgtagtacgaaccgaaaaacccctcttct |
415 |
Q |
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| T |
30897407 |
ttcttgtattgaaccatgtattgtccattttggagacgtgaaacaactctggctttgtagtacgaaccgaaaaacccctcttct |
30897324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 30962905 - 30962987
Alignment:
| Q |
179 |
atttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacacgtgg |
261 |
Q |
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| T |
30962905 |
attttccctacccaccaaccatctttataaaaaacatcaactttttgattgagttgaaacttagaaggatttcgaacacgtgg |
30962987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 158 - 360
Target Start/End: Original strand, 5963476 - 5963678
Alignment:
| Q |
158 |
gtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacac |
257 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||| || | |||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
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| T |
5963476 |
gtgatgatcttctcactagtgatttgccctaaccaccaaccatcgttgtcaaaagcatcaactttttgattgagttgaaactcacgaggactacgaacac |
5963575 |
T |
|
| Q |
258 |
gtggtggtgttggacgtagctcatatggataaatggtctctacaagaggtccagacttgtcctcaagcaaaagattcttgtattgaaccatgtattgtcc |
357 |
Q |
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| T |
5963576 |
gtggcggtaatggacgaagctcatatggatgaacggtctctaagagaagtctagacttatcatcttgcaaaaggtttttgtaacgaaccaaatattgtcc |
5963675 |
T |
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| Q |
358 |
att |
360 |
Q |
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||| |
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| T |
5963676 |
att |
5963678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 38782762 - 38782652
Alignment:
| Q |
163 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaa-ttcatgaggattacgaacacgtgg |
261 |
Q |
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||||||||| || | ||||| ||||||||||||||||| |||| || |||||||||| |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
38782762 |
gatcttctcgctagcgattttacctacccaccaaccatcgttatcaaatacatcaactttttgattgagtttaaacttca-aaggattacgaacatgtgg |
38782664 |
T |
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| Q |
262 |
tggtgttggacg |
273 |
Q |
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|||| ||||||| |
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| T |
38782663 |
tggtattggacg |
38782652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 38788934 - 38788864
Alignment:
| Q |
163 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagtt |
233 |
Q |
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||||||||| || | ||||| |||||||||||||||||| |||| || ||||||||||||||||||||| |
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| T |
38788934 |
gatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
38788864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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