View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15532_low_9 (Length: 391)

Name: NF15532_low_9
Description: NF15532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15532_low_9
NF15532_low_9
[»] chr1 (1 HSPs)
chr1 (4-391)||(38944902-38945288)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 4 - 391
Target Start/End: Complemental strand, 38945288 - 38944902
Alignment:
Q  4 aacaaaggatagatgtttgttgtgtgtccttattcacaatttttaatatttcaatataattattccaaccatgcatgacctgcacgtttattgttctctt 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38945288 aacaaaggttagatgtttgttgtgtgtccttattcacaatttttaatatttcaatataattattccaaccatgcatgacctgcacgtttattgttctctt 38945189  T
Q  104 tgtttttatcgatggattatttttcgttttgattcatgataactatgtaggtagacacgttatacctcatatctagatgtcgagttgctcaccaaatttt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38945188 tgtttttatcgatggattatttttcgttttgattcatgataactctgtaggtagacacgttatacctcatatctagatgtcgagttgctcaccaaatttt 38945089  T
Q  204 gacaatcaaccttaattgctcagttttcacatcttgatactcggtaactttttcgtttcaagcaccattttagtggaaaagacaattagtcaattgtatg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  38945088 gacaatcaaccttaattgctcagttttcacatcttgatactcggtaactttttcgtttcaagcaccattgtagtggaaaagacaattagtaaattttatg 38944989  T
Q  304 gtaaaatgtgaaaacaattggaacaggtnnnnnnntatggtttgaaaaagatgagttgaattctgaccaaaacaatccttaactagat 391  Q
    |||||||||||||||||||||||||  |       ||||||||||||||| |||||||||||||||| || |||||||||||||||||    
T  38944988 gtaaaatgtgaaaacaattggaaca-ttaaaaaaatatggtttgaaaaagttgagttgaattctgactaagacaatccttaactagat 38944902  T

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