View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15533_high_7 (Length: 224)
Name: NF15533_high_7
Description: NF15533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15533_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 24056783 - 24056952
Alignment:
| Q |
36 |
agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccctccaac |
135 |
Q |
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| T |
24056783 |
agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccctccaac |
24056882 |
T |
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| Q |
136 |
ttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccaccaccatacatcctcacctt |
205 |
Q |
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| T |
24056883 |
ttcttgtacatagagttcaccgagaaccaaccgttctcttccaatccccaccaccatacatcctcacctt |
24056952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
| Q |
26 |
tccaagaaaaagccaccactttggacggagctgaactcttccaaa |
70 |
Q |
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| T |
22905032 |
tccaagaaaaagccacgactttggacggagccggactcttccaaa |
22905076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
| Q |
26 |
tccaagaaaaagccaccactttggacggagctgaactcttccaaa |
70 |
Q |
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| T |
22956700 |
tccaagaaaaagccacgactttggacggagccggactcttccaaa |
22956744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
| Q |
26 |
tccaagaaaaagccaccactttggacggagctgaactcttccaaa |
70 |
Q |
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| T |
43441788 |
tccaagaaaaagccacgactttggacggagccggactcttccaaa |
43441832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
| Q |
27 |
ccaagaaaaagccaccactttggacggagctgaactcttccaaa |
70 |
Q |
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| T |
44645389 |
ccaagaaaaagccaccaccttggatggagccgaactcttccaaa |
44645346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 26728439 - 26728379
Alignment:
| Q |
128 |
cctccaacttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccacca |
188 |
Q |
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| T |
26728439 |
cctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccacca |
26728379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
| Q |
19 |
agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata |
72 |
Q |
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| T |
3961182 |
agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata |
3961235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 4903536 - 4903479
Alignment:
| Q |
19 |
agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg |
76 |
Q |
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| T |
4903536 |
agaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg |
4903479 |
T |
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