View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15533_low_2 (Length: 390)
Name: NF15533_low_2
Description: NF15533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15533_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 51059989 - 51059628
Alignment:
| Q |
1 |
ttcttttcttttaacacaacttttccctcctaaatttccaaatagattttaaactgttggaatgtatagatatctttttcaataagtgtacgtattcaat |
100 |
Q |
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| T |
51059989 |
ttcttttcttttcacacaacttttccctcctaaatttccaaatagattttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaat |
51059890 |
T |
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| Q |
101 |
ttttactttattttattgtttaatactttgatctatttcattcnnnnnnnaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattg |
200 |
Q |
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| T |
51059889 |
ttttactttattttattgtttaatactttgatccatttcattctttttttaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattg |
51059790 |
T |
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| Q |
201 |
tttaatatggagatttggagtgagctcttttggaccagcattacctccggatgcatgatgatgccaatacaaggatgattcaccatcatcgattagtttt |
300 |
Q |
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| T |
51059789 |
tttaatatggagatttggagtgagctcttttggaccagcattacctccggatgcatgacgatgacaataca----------accatcatcgattagtttt |
51059700 |
T |
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| Q |
301 |
gtgacgactcttccatatgtttgtggatgactagtaataataaggtgttccaaaactctactatgattgttt |
372 |
Q |
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| T |
51059699 |
gtgacgactctttcatatgtttgtggatgactagtaataataaggtgttccaaaactctactatgattgttt |
51059628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 34617982 - 34618047
Alignment:
| Q |
188 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
253 |
Q |
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| T |
34617982 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
34618047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 34617838 - 34617899
Alignment:
| Q |
26 |
cctcctaaatttccaaatagattttaaactgttggaatgtatagatatctttttcaataagt |
87 |
Q |
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| T |
34617838 |
cctcctaaacttccaaatagatgttaaaccattggaatgtctagatatctttttcaacaagt |
34617899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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