View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15533_low_3 (Length: 367)
Name: NF15533_low_3
Description: NF15533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15533_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19602684 - 19602879
Alignment:
| Q |
1 |
atatcatgattcattgattcttattatatctataaattcctctgttatataatactgtattcgtgcagtgtttccatcgaatcatcacaatgtcttctcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19602684 |
atattatgattcattgattcttattatatctataaattcctctgttatataataatgtattcatgcagtgtttccatcgaatcatcacaatgtcttctcc |
19602783 |
T |
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| Q |
101 |
gagtagtgttcatcagttccataagtcacaatgttttttcaaagtcatcgtcgagaaaacccttaaaaagaaagagattgtaagtgcatgttaatc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19602784 |
gagtagtgttcatcagttccataagtcacaatgttttttcaaagtcatcgtcgagaaaacccttaaaaagaaagagattgtaagtgcatgttaatc |
19602879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 19602942 - 19603032
Alignment:
| Q |
259 |
gtgaatctaaaatgtttgcaatgtaacagatgcttcctaggagttttgtgaagaaatatggnnnnnnnttatcaaacccagtaaccctagt |
349 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19602942 |
gtgaatctaaaatgtttgcaatgtaacagatacttcctaggagttttgtgaagaaatatggaaaaaaattatcaaacccagtaaccctagt |
19603032 |
T |
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