View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15533_low_4 (Length: 327)
Name: NF15533_low_4
Description: NF15533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15533_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 145 - 321
Target Start/End: Original strand, 52911093 - 52911269
Alignment:
| Q |
145 |
gttgatagatgaaatgacaaaagtcatcggaaactcacatataactggaggagccggactttgaacctaatcacggtgtccaacctaataattttggtat |
244 |
Q |
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| T |
52911093 |
gttgatagatgaaatgacaaaagtcatcgaaaactcacatataactggaggagccggactttgaacctagtcacggtgtccaacctaataattttggtat |
52911192 |
T |
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| Q |
245 |
tcttgttagttgagctagaacttgtggactctcgagaccaaattagcttaaatggttttattctttagtattatcta |
321 |
Q |
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| T |
52911193 |
tcttgttagttgagctagaacctgtggactcttgagaccaaattagcttaaatggttttattctttagtattgtcta |
52911269 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 52910950 - 52911048
Alignment:
| Q |
1 |
tttgttgaagacaataattaagatttgatataaaaatacaactgaacaactcatggtggtttttatattctaaccaccaatcagcgcctttaggctctc |
99 |
Q |
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| T |
52910950 |
tttgttgaagacaataattaagatgtgatataaaaataaaactgaacaatccatggtggtttttatattctaaccaccaatcagcgcctttaggctctc |
52911048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 17480975 - 17480926
Alignment:
| Q |
228 |
cctaataattttggtattcttgttagttgagctagaacttgtggactctc |
277 |
Q |
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| T |
17480975 |
cctaacaattttggcatttttgtcagttgagctagaacttgtggattctc |
17480926 |
T |
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