View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15533_low_5 (Length: 320)

Name: NF15533_low_5
Description: NF15533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15533_low_5
NF15533_low_5
[»] chr4 (1 HSPs)
chr4 (1-320)||(52910532-52910859)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 52910859 - 52910532
Alignment:
Q  1 ctgttattacaaataatgtgttgatctattaaattgtattttattcaccatgtatgattttattcacaggatgaggtatttgaattgtctttgcatcaca 100  Q
    |||||||||||||| || |||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52910859 ctgttattacaaatgatctgttgatctattcaatt-tcttttattcaccatgtatgattttattcacaggatgaggtatttgaattgtctttgcatcaca 52910761  T
Q  101 atttgtgattgtcttcctttcttaaaaaggaagaaaaaagagtacttgagaac---------tcatctaaccttaactaacaaataattacgagtatcaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  52910760 atttgtgattgtcttcctttcttaaaaaggaagaaaaaagattacttgagaaccaagctaactcatctaaccttaactaacaaataattacgagtatcaa 52910661  T
Q  192 tagctcactgtcaattggcattacagttagaagtagttagaattggtatcacgcttgtaatcctagtctagagctaacctataagtttgattcatcacta 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52910660 tagctcactgtcaattggcattacagttagaagtagttagaattggtatcacgcttgttatcctagtctagagctaacctataagtttgattcatcacta 52910561  T
Q  292 ttgtaacatttgattcattgaaaaataat 320  Q
    |||||||||||||||||||||||||||||    
T  52910560 ttgtaacatttgattcattgaaaaataat 52910532  T

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