View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15534_high_4 (Length: 408)
Name: NF15534_high_4
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 11247645 - 11247333
Alignment:
| Q |
21 |
acaaaaagacgatacacactccgcaccgaataatgcccattcttctcgggtt-ccacactaataatctatttgtattctttactttttgtctttacaaac |
119 |
Q |
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| T |
11247645 |
acaaaaagaccatatacactccgcaccgaataatgcccattcttctcgggtttccacactaat---ctatttgtattctttagtttttgtctttaaaaac |
11247549 |
T |
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| Q |
120 |
agaaatttatataaacannnnnnnaaatcttaagagatgtatcaatcttgtggtcgaagttcaccgttttgaataataacaataataataattctttttg |
219 |
Q |
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| T |
11247548 |
agaaatttatataaacatttttt-aaatcttaagagatgaatcaatcttgtgttcgaagttcaccattttgaataataacaataataatgattctttttg |
11247450 |
T |
|
| Q |
220 |
gaaataaagagtgtcagatgctgaagaagcactaaacaacgtctagactagagatggcaactcccaacagatcaaccaaatgcaaagaaataaattgagc |
319 |
Q |
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| T |
11247449 |
gaaataaagagtgtcagatgctgaagaatgactaaacaacaattagtctagagatggcaactcccaacaaatcaaccaaatgcaaagaaataaattgagc |
11247350 |
T |
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| Q |
320 |
atgacaatgctcataaa |
336 |
Q |
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| T |
11247349 |
atgacaatgctcataaa |
11247333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29206577 - 29206511
Alignment:
| Q |
1 |
tattatccacaatatcttcgacaaaaagacgatacacactccgcaccgaataatgcccattcttctc |
67 |
Q |
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| T |
29206577 |
tattattcacaatatctttgacacaaagacgatacgcacttggtaccgaataatgcccattcttctc |
29206511 |
T |
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