View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15534_high_5 (Length: 329)
Name: NF15534_high_5
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 36360497 - 36360175
Alignment:
| Q |
1 |
attatggagctaaaggggatggtcatacggatgacacacaggtataataaactcttaatatgtagcttaaaaatcataatatatacgaactattgataaa |
100 |
Q |
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| T |
36360497 |
attatggagctaaaggggatggtcatacggatgacacacaggtataataaactcttaatatatagcttaaaaatcaaaatatatacgaactattgataaa |
36360398 |
T |
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| Q |
101 |
tttcatatttaatattttgtatgcccatgcgatactaatttggttttctattaacatcaaatgattttctnnnnnnntaacttaaattttcctataattg |
200 |
Q |
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| T |
36360397 |
tttcatatttaatattttgtatgcccatacgatactaatttggttttctattaacatc-aatgattttctaaaaaaataacttaaattttcctataattg |
36360299 |
T |
|
| Q |
201 |
gacatataataatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360298 |
gacatataataatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagggcaatcagttttagtggcacctcaagattataattatctactc |
36360199 |
T |
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| Q |
301 |
aaaccaatcagattctctgctcct |
324 |
Q |
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||||||||||||||||||| |||| |
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| T |
36360198 |
aaaccaatcagattctctggtcct |
36360175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 36349031 - 36348911
Alignment:
| Q |
210 |
taatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg------gcaatcagttttagtggcacctcaagattataattatctactcaaa |
303 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||| ||||| | || ||||||| || |||||||||||| ||| ||||||||||||| |
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| T |
36349031 |
taatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaa |
36348932 |
T |
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| Q |
304 |
ccaatcagattctctgctcct |
324 |
Q |
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|||||||||||||||| |||| |
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| T |
36348931 |
ccaatcagattctctggtcct |
36348911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36349164 - 36349119
Alignment:
| Q |
1 |
attatggagctaaaggggatggtcatacggatgacacacaggtata |
46 |
Q |
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||||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
36349164 |
attatggagctaaaggggatggtaaaactgatgacacacaggtata |
36349119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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