View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15534_high_6 (Length: 277)
Name: NF15534_high_6
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 25229361 - 25229209
Alignment:
| Q |
3 |
tagtcgttgtgctttggttatcagcttatgatttttgcttctgatcttcttgtacacatttggttatgtttcagtcatctttccttctgttgcttttctg |
102 |
Q |
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| T |
25229361 |
tagtcgttgtgctttggttatcagcttatgatttttgcttctgatcttcttgtacacctttggttatgtttcaatcatctttccttatcttgcttttctg |
25229262 |
T |
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| Q |
103 |
aatatcctattatgaagtccattctcacctgcttctaatctttggaatttcaa |
155 |
Q |
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| T |
25229261 |
aatctcctattctgaagtccattctgatttgcttctaatctttggaatttcaa |
25229209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 25227282 - 25227194
Alignment:
| Q |
175 |
cctcgacaagggaaggaattgaaggtaaagaagcattgctactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtaggtaga |
263 |
Q |
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| T |
25227282 |
cctcgacaagggaaggaattgaaggtaaagaagcattgctactttcttcttgcaaaaccaaaaagaaaaccttgttcaaggtaggtaga |
25227194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 18737562 - 18737716
Alignment:
| Q |
1 |
actagtcgttgtgctttggttatcagcttatgatttttgcttctgatcttcttgtacacatttggttatgtttcagtcatctttccttctgttgcttttc |
100 |
Q |
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| T |
18737562 |
actagccgttgtgcaatgcttctcaacttttgatcttggcttctgatcttattgtgcacctttggttgtgtttctatcatcattccttttgattttttta |
18737661 |
T |
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| Q |
101 |
tgaatatcctattatgaagtccattctcacctgcttctaatctttggaatttcaa |
155 |
Q |
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| T |
18737662 |
tgaatttccgattatgaattcttttctgacctgcttctgaactttggattttcaa |
18737716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 30757377 - 30757422
Alignment:
| Q |
214 |
tactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtagg |
259 |
Q |
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| T |
30757377 |
tactttcttcttgtaaaaccaaagagaaattcttattcaaggtagg |
30757422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 30764829 - 30764874
Alignment:
| Q |
214 |
tactttcttcttgcaaaaccaaagagaaaaccttgttcaaggtagg |
259 |
Q |
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| T |
30764829 |
tactttcttcttgtaaaaccaaagagaaattcttattcaaggtagg |
30764874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 44668967 - 44669013
Alignment:
| Q |
209 |
attgctactttcttcttgcaaaaccaaagagaaaaccttgttcaagg |
255 |
Q |
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| T |
44668967 |
attgttactctcttcttgaataaccaaagagaaaaccttgttcaagg |
44669013 |
T |
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