View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15534_low_1 (Length: 1063)
Name: NF15534_low_1
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 483 - 939
Target Start/End: Complemental strand, 32288025 - 32287567
Alignment:
| Q |
483 |
tgtataaattcggcgagtgtgagataatgcgatgttattatatggatcaattcatattcaaaggaaatgcattatatatacttgagaggttaattaagcg |
582 |
Q |
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| T |
32288025 |
tgtataaattcggcgagtgtgagatcatgcgatgttattatatggatcaattcatattcaagggaaaggcattatatatacttgagaggttaattaagcg |
32287926 |
T |
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| Q |
583 |
gtgagtgaggagtagcattgatgccaccgtggcttatacagcatctgccacgttgggttggatggattggacacactcaacacgtatttatggtctcaaa |
682 |
Q |
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| T |
32287925 |
gtgagtgaggagtagcattgatgccaccgtggcttatacagcatctgccacgttgggttggatggattggacacactcgacacgtatgtatggtctcaaa |
32287826 |
T |
|
| Q |
683 |
ttgataacaaattctggtatcatcggtgcggtgctcggaggaaggagaaggactcggaaatgtggaaaatatatttggccacaaataaaaaattaaggag |
782 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32287825 |
ttgataacaaattctggtatcatcggtgcggtgctcggaggaaggagaaggactcggaaatgtggaaaatatatttggccacaaataaaaaattaaggag |
32287726 |
T |
|
| Q |
783 |
atcttaacctttaatttccacattattaataatcaaaagtaatttaccaaacagagcctacatctaaattaagttcaannnnnnnnagaagtaaaataag |
882 |
Q |
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| T |
32287725 |
atcttaacctttaatttccacattattaataatcaaaagtaatttaccaaacagagcctatatctaaattaagttcaa-tttttttagaagtaaaataaa |
32287627 |
T |
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| Q |
883 |
aggggaggtttccgcttag---gtcagttggtagggagtagggacattgtataatttatg |
939 |
Q |
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| T |
32287626 |
aggggaggttcccgcttaggttgttagttggtagggagtagggacattgcataatttatg |
32287567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 39 - 439
Target Start/End: Complemental strand, 32288454 - 32288054
Alignment:
| Q |
39 |
ctaagcactaaaaatactatagctagctatgacccatgaccttatatatcaatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttc |
138 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288454 |
ctaagcactaataatactatagctagctatgacccatgaccttatatatcaatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttc |
32288355 |
T |
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| Q |
139 |
attccagcattgccacctgcagcaccaccgccgccgccgcccatatttgcttcttgtccaccctgtcctccaccagcatttgcatcgccaaatccaggag |
238 |
Q |
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| T |
32288354 |
attccagtattgccacctgcagcaccaccgccgccgccacccatatttgcttcttgtccactctgtcctccaccagcatttgcatcgccaaatccaggag |
32288255 |
T |
|
| Q |
239 |
cagcagtgccatatacagcagtgtattcataccttgaggtggtggtgccatcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgc |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32288254 |
cagcagtgccatatacagcagtgtattcataccttgaggtggtggtgccatcaggtgttactccggtggcctcataagcgtatgcggtcaccgggtatgc |
32288155 |
T |
|
| Q |
339 |
ggctactggttccgtaacaccactttggaatgcatcgctcttctgaatatctttttcactatcgcccgttctaggaagattttgaaattgatcgttaggg |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
32288154 |
ggctactggttccgtaacaccactttggaatgcatcgctcttccgaatatctttttcactatcgtccgttcttgaaagattttgaaattgatcgttaggg |
32288055 |
T |
|
| Q |
439 |
c |
439 |
Q |
| |
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| |
|
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| T |
32288054 |
c |
32288054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 962 - 1048
Target Start/End: Complemental strand, 32287503 - 32287417
Alignment:
| Q |
962 |
attaaaccaaaaataaataaataagagttgagagattagtaaaggcaaccacaaaaattatcattttcttttgcttggggttgaaat |
1048 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32287503 |
attagaccaaaaataaataaataagaggggagagattagtaaaggcaaccacaaaaattatcattttcttttgcttggggttgaaat |
32287417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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