View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15534_low_2 (Length: 613)
Name: NF15534_low_2
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 10 - 603
Target Start/End: Original strand, 1515863 - 1516456
Alignment:
| Q |
10 |
atgaagtaatcatcatttgaatatagcaaattccgtaaagacagttaaaaatatgaataacaannnnnnnnaccctgacctgacaatactttgtttattg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1515863 |
atgaagtaatcatcatttgaatatagcaaattctgtaaagacagttaaaaatatcaataacaattttttttaccctgacctgacaatactttgtttattg |
1515962 |
T |
|
| Q |
110 |
atgcagtattagggaaggttaaagacttcttaggagtgatgtcagaagcaaataagcagctggaacatgatgcaaaggttaaaactctttctagttgaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1515963 |
atgcagtattagggaaggttaaagacttcttaggagtgatgtcagaagcaaataagcagctggaacatgatgcaaaggtttaaactctttctagttgaag |
1516062 |
T |
|
| Q |
210 |
atataatttttacttctttcctattttcttatatctccaattctnnnnnnntgtaggaacatccagagaaatatgatattgaagggctgactggaaatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1516063 |
atataatttttacttctttcctattttcttatatctccaattctaaaaaaatgtaggaacatccagagaaatatgatattgaagggctaactggaaatga |
1516162 |
T |
|
| Q |
310 |
atctgaagttattgaaatggtcagtcaatgttttatctttctttgcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgcaaata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516163 |
atctgaagttattgaaatggtcagtcaacgttttatctttctttgcatatcaataatccttctacttgtgtgtttatgtcatattacttgcttgcaaata |
1516262 |
T |
|
| Q |
410 |
gtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagag |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516263 |
gtggaatattaaattatattttttcgattacgtttcctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagag |
1516362 |
T |
|
| Q |
510 |
tcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatgatgatg |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516363 |
tcagctatttccaattctcagcctgtgatttcattggctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatgatgatg |
1516456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 446 - 600
Target Start/End: Complemental strand, 36613686 - 36613535
Alignment:
| Q |
446 |
ctggcaggatttgatgcttggtgttgccgatcttaatacacctgaggctgttgctgctgcagagtcagctatttccaattctcagcctgtgatttcattg |
545 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| |||||||| || ||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
36613686 |
ctggcaggatttgatgcttggtgttgctgatcttcatacaccagaggctgtggcagctgcagagtcagctgtttccagttgtcagcctgtgatttcattg |
36613587 |
T |
|
| Q |
546 |
gctgctgacgatgatagtgaaacagattcagaagaagaaagtagcactgatgatg |
600 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||| || | ||||||| |
|
|
| T |
36613586 |
gctgct---gatgatagtgaaatagattcagaagaagaaagtggcgccgatgatg |
36613535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 110 - 346
Target Start/End: Complemental strand, 36614023 - 36613768
Alignment:
| Q |
110 |
atgcagtattagggaaggttaaagacttcttaggagtgatgtcagaagcaaataagcagctggaacatgatgcaaaggttaaaact--ctttctagttga |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| |||||||||||||||||| || |||||| |||| |
|
|
| T |
36614023 |
atgcagttttagggaaggttaaagacttcctaggagtgatgtcagaagcaaataagcggttggagcatgatgcaaaggttaaagcttgatttctaattga |
36613924 |
T |
|
| Q |
208 |
agatataatttttac---------------ttctttcctattttcttatatctccaattc--tnnnnnnntgtaggaacatccagagaaatatgatattg |
290 |
Q |
| |
|
||||||||||||||| || || ||||||| |||||| ||||||||| ||||||| |||||||||||||||||| ||| |
|
|
| T |
36613923 |
agatataatttttaccactttgcagatatttttttccctatttccttatacctccaattcaaaaaacaaatgtaggaccatccagagaaatatgattttg |
36613824 |
T |
|
| Q |
291 |
aagggctgactggaaatgaatctgaagttattgaaatggtcagtcaatgttttatc |
346 |
Q |
| |
|
||| ||| || ||||||||||| ||||||||||||||||| |||||||||| |||| |
|
|
| T |
36613823 |
aagagctaacgggaaatgaatccgaagttattgaaatggttagtcaatgttctatc |
36613768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University