View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15534_low_3 (Length: 582)

Name: NF15534_low_3
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15534_low_3
NF15534_low_3
[»] chr6 (10 HSPs)
chr6 (134-565)||(2297168-2297599)
chr6 (156-477)||(2261232-2261553)
chr6 (275-519)||(2307408-2307652)
chr6 (275-519)||(2340089-2340333)
chr6 (226-454)||(2351493-2351721)
chr6 (321-455)||(14711313-14711447)
chr6 (318-460)||(14753379-14753521)
chr6 (14-70)||(2297048-2297104)
chr6 (297-438)||(2363195-2363336)
chr6 (328-438)||(2368972-2369082)
[»] scaffold0408 (1 HSPs)
scaffold0408 (329-460)||(553-684)
[»] chr3 (1 HSPs)
chr3 (297-438)||(4305893-4306034)
[»] chr4 (1 HSPs)
chr4 (279-549)||(5804121-5804391)


Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 134 - 565
Target Start/End: Original strand, 2297168 - 2297599
Alignment:
Q  134 ttgtgtaagagagtcagatgttaataaattagtatatcttgatgctataattaaagagacactaagattctatccaccagctccattttcgtcacctcgc 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297168 ttgtgtaagagagtcagatgttaataaattagtatatcttgatgctataattaaagagacactaagattctatccaccagctccattttcgtcacctcgc 2297267  T
Q  234 gaattcacagaagattgcacaataggcggataccatatcaaaaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggc 333  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  2297268 gaattcacagaagattgcacaataggtggataccatatcaaaaagggaactcgattgatgccaaatctatggaagattcatagagactctagggtttggt 2297367  T
Q  334 cagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaag 433  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297368 cagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaag 2297467  T
Q  434 aaggaggtgtgctggaatatcccttggtttgcatatgcttcattatattctagctaatttcttgcattcttttgacatcttgaatctatctcctgaatca 533  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  2297468 aaggaggtgtgctggaatgtcccttggtttgcatatgcttcattatattctagctaatttcttgcattcttttgatatcttgaatctatctccagaatca 2297567  T
Q  534 attgatttgactgaagtccttgattttactag 565  Q
    ||||||||||||||||||||||| ||||||||    
T  2297568 attgatttgactgaagtccttgaatttactag 2297599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 156 - 477
Target Start/End: Complemental strand, 2261553 - 2261232
Alignment:
Q  156 aataaattagtatatcttgatgctataattaaagagacactaagattctatccaccagctccattttcgtcacctcgcgaattcacagaagattgcacaa 255  Q
    ||||| || ||||||||| | || ||| | ||||| || |||||||| ||||| |||| |||  | ||  ||||||| ||||||||||||||||| ||      
T  2261553 aataagttggtatatcttcaagcaatagtcaaagaaaccctaagattgtatcctccaggtcctctctcagcacctcgtgaattcacagaagattgtacgt 2261454  T
Q  256 taggcggataccatatcaaaaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacc 355  Q
    |||| || || | ||||||||| |||||| || | ||  ||||||| ||||| ||||| |  || || ||  ||||||||||||||||||| ||||||||    
T  2261453 taggtggctatcgtatcaaaaaaggaactagacttatcacaaatctttggaaaattcaaaccgatccaagtatttggccagatccattagagttcaaacc 2261354  T
Q  356 tgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcc 455  Q
     ||||| |||||||||||||||||| ||||||||     ||||||| ||||||||||||| |||||||||||||| |||||||  ||| | ||||||||     
T  2261353 agaaagatttcttaccactcacaaaaatgttgatgccaagggtcaacattttgagttgttaccatttggaagtggtagaaggatatgtccaggaatatct 2261254  T
Q  456 cttggtttgcatatgcttcatt 477  Q
     ||||| | |||||| ||||||    
T  2261253 tttggtcttcatatgattcatt 2261232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 275 - 519
Target Start/End: Original strand, 2307408 - 2307652
Alignment:
Q  275 aaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccact 374  Q
    ||||||||||||||| ||  ||||||| |||| |||| | |  || ||||   ||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  2307408 aaagggaactcgattaatcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccact 2307507  T
Q  375 cacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttc 474  Q
    || |||||||||||| || |||||   ||||||| | | ||||||||||||||||| |||||||  ||  |||||||||| |||||  | || ||||| |    
T  2307508 cataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatcacttggacttcaaatgctgc 2307607  T
Q  475 attatattctagctaatttcttgcattcttttgacatcttgaatc 519  Q
    |||  |||||||||| ||| |||||||| ||||| ||||| ||||    
T  2307608 atttcattctagctagttttttgcattcctttgatatcttaaatc 2307652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 275 - 519
Target Start/End: Original strand, 2340089 - 2340333
Alignment:
Q  275 aaagggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccact 374  Q
    ||||||||||||||| ||  ||||||| ||||||||||| | ||| ||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||    
T  2340089 aaagggaactcgattaatcacaaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccact 2340188  T
Q  375 cacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttc 474  Q
    || |||| ||||||| || | ||| |  |||||||  | || |||||||||||||| |||||||  ||| ||||||||||  ||||  | || ||||| |    
T  2340189 cataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcgtttggacttcaaatgctgc 2340288  T
Q  475 attatattctagctaatttcttgcattcttttgacatcttgaatc 519  Q
    |||  |  ||||||| ||| |||||||| ||||| ||||| ||||    
T  2340289 atttcaccctagctagttttttgcattcctttgatatcttaaatc 2340333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 226 - 454
Target Start/End: Original strand, 2351493 - 2351721
Alignment:
Q  226 cacctcgcgaattcacagaagattgcacaataggcggataccatatcaaaaagggaactcgattgatgccaaatctatggaagattcatagagaccctag 325  Q
    ||||||| |||||| ||||  ||||||| || || || |||||| | | ||| |||||||| || |||| |||||| ||||||||||| |  || |||||    
T  2351493 cacctcgtgaattctcagagaattgcactattggtggttaccatgttagaaaaggaactcggttaatgctaaatctttggaagattcaaactgatcctag 2351592  T
Q  326 ggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttgga 425  Q
     |||||| ||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||| || | ||| |  |||||||  |  | |||||||||    
T  2351593 tgtttggtcagatccattagagttcaaaccagaaaggtttcttaccactcataaagttgttgatgttagaggtaatcattttgaactactaccatttgga 2351692  T
Q  426 agtggaagaaggaggtgtgctggaatatc 454  Q
    ||||| ||||||| |||| ||| ||||||    
T  2351693 agtggtagaaggaagtgtcctgcaatatc 2351721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 455
Target Start/End: Complemental strand, 14711447 - 14711313
Alignment:
Q  321 cctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccat 420  Q
    ||||| |||||||| |||||||| || ||||||||||| || |||||||| ||||| |||||||||||| || | ||| |  |||||||| | || ||||    
T  14711447 cctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatcattttgagcttttaccat 14711348  T
Q  421 ttggaagtggaagaaggaggtgtgctggaatatcc 455  Q
    |||||||||||||||||| |||| |||||||||||    
T  14711347 ttggaagtggaagaaggatgtgtcctggaatatcc 14711313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 318 - 460
Target Start/End: Complemental strand, 14753521 - 14753379
Alignment:
Q  318 gaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgc 417  Q
    |||||||| |||||||| |||||||| || ||||| ||||  || |||||||| ||||| |||||||||||| ||  ||||||  |||||||||| || |    
T  14753521 gaccctagcgtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttac 14753422  T
Q  418 catttggaagtggaagaaggaggtgtgctggaatatcccttgg 460  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||    
T  14753421 catttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 2297048 - 2297104
Alignment:
Q  14 cataggaggaagtgacacaaccgctggaacacttacatgggcaatgtctttactatt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2297048 cataggaggaagtgacacaaccgctggaacacttacatgggcaatgtctttactatt 2297104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 438
Target Start/End: Original strand, 2363195 - 2363336
Alignment:
Q  297 aatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggg 396  Q
    ||||| ||||||||||| |  || ||||  |||||| |||||||||||| ||||||||| || ||||||||||| || || |||||| ||||| || | |    
T  2363195 aatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaaccggagaggtttcttacaacgcataaagatattgattttagag 2363294  T
Q  397 gtcaaaattttgagttgttgccatttggaagtggaagaagga 438  Q
    || |  |||||||| | || ||||||||| |||| |||||||    
T  2363295 gtaatcattttgagctattaccatttggaggtggtagaagga 2363336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 2368972 - 2369082
Alignment:
Q  328 tttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaag 427  Q
    ||||| || ||||||| ||||||||||| ||  |||||||||| || || ||||| |||||| || | |||||  |||||||| | || ||||||||| |    
T  2368972 tttggtcaaatccattggaattcaaaccagagcggtttcttactacccataaagacgttgatgttagaggtcatcattttgagctattaccatttggagg 2369071  T
Q  428 tggaagaagga 438  Q
    ||| |||||||    
T  2369072 tggtagaagga 2369082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 329 - 460
Target Start/End: Original strand, 553 - 684
Alignment:
Q  329 ttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagt 428  Q
    |||||| |||||||| || ||||| ||||  || |||||||| ||||| |||||||||||| ||  ||||||  |||||||||| || ||||||||||||    
T  553 ttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagt 652  T
Q  429 ggaagaaggaggtgtgctggaatatcccttgg 460  Q
    ||||||||||  ||| ||||||||||| ||||    
T  653 ggaagaaggatttgtcctggaatatcctttgg 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 438
Target Start/End: Original strand, 4305893 - 4306034
Alignment:
Q  297 aatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcacaaagatgttgatcttgggg 396  Q
    |||||||||||||| ||||  || |||| |||||||  ||| || ||||| |||||||| ||| |||||||||| ||||| |||| ||||||| ||  ||    
T  4305893 aatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaaccagaacggtttcttactactcataaaggtgttgatgttaagg 4305992  T
Q  397 gtcaaaattttgagttgttgccatttggaagtggaagaagga 438  Q
    ||||  |||||||||| || |||||||||||||| |||||||    
T  4305993 gtcatcattttgagttattaccatttggaagtggtagaagga 4306034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 549
Target Start/End: Complemental strand, 5804391 - 5804121
Alignment:
Q  279 ggaactcgattgatgccaaatctatggaagattcatagagaccctagggtttggccagatccattagaattcaaacctgaaaggtttcttaccactcaca 378  Q
    ||||||||||| ||  ||||||| |||||||| || | ||| | ||| ||||||||| |||||||||| || || || |||||||||||||| ||||| |    
T  5804391 ggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagccagaaaggtttcttacaactcata 5804292  T
Q  379 aagatgttgatcttgggggtcaaaattttgagttgttgccatttggaagtggaagaaggaggtgtgctggaatatcccttggtttgcatatgcttcatta 478  Q
    ||||| ||||| || ||||| |  |||||||  |    |||||||||||||| |||||||  ||| |||||||||   ||||  | || ||| | ||||     
T  5804291 aagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatatgttttggacttcaaatggtgcattt 5804192  T
Q  479 tattctagctaatttcttgcattcttttgacatcttgaatctatctcctgaatcaattgatttgactgaag 549  Q
    || |||||||| ||| |||||||| ||||| ||||| |||| | | ||||||   |||||| |||||||||    
T  5804191 tactctagctagttttttgcattcctttgatatcttaaatccaacacctgaacttattgatatgactgaag 5804121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University