View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15534_low_4 (Length: 553)
Name: NF15534_low_4
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 5037282 - 5036753
Alignment:
| Q |
11 |
tatagtattaaggatcgcaattggaccacagttttgatttagaactttggtcacacatgtcttattaaaaggctaaaacttgttttgatacattttatag |
110 |
Q |
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| T |
5037282 |
tatagtattaaggatcgcaattggaccacagttttgatttagaactttggtcacacatgtcttattaaaaggctaaaacttgttttgatacattttatag |
5037183 |
T |
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| Q |
111 |
ggatggaattcatttgtcacatgaggggagcaagatagtggtaaaagagatattgaaggtcctcgatgacgcggactggaacccaagtctacactggaaa |
210 |
Q |
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| T |
5037182 |
ggatggaattcatttgtcacatgaggggagcaagatagtggtaaaagagatattgaaggtcctcgatgacgcggactggaacccaagtctacactggaaa |
5037083 |
T |
|
| Q |
211 |
tcaatgccaaatgagtttgcagaagattcaccatatgatccggttgctatagatgaaaagactacagtaaatggatccacctgcaacttccagaagaatt |
310 |
Q |
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| T |
5037082 |
tcaatgccaaatgagtttgcagaagattcaccatatgatccagttgctatagatgaaaagactacagtaaatgtatccaactggaacttccagaagaatt |
5036983 |
T |
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| Q |
311 |
ttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaatttgaagaatcagctgtcactaaccagcaaggtctataactgagatc |
410 |
Q |
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| T |
5036982 |
ttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaattttaagaatcagctgtcactaaccagcaaggtctataactgagatc |
5036883 |
T |
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| Q |
411 |
aagaaaagtatttgaaatgactttgggaaaaagttaccaggtttatgaacacaagtgttgtgttcaaaaaataagtactagaattttatttattatcaaa |
510 |
Q |
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| T |
5036882 |
aagaaaagtatttgaaatgactttgggaaaaagttatcaggtttatgaacacaagtgttgtgttcaaaaaataagtactagaattttatttattatcaaa |
5036783 |
T |
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| Q |
511 |
ataatatgaagatcatcaataaagtattat |
540 |
Q |
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| T |
5036782 |
ataatatgaagatcatcaataaagtattat |
5036753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 524
Target Start/End: Complemental strand, 5032131 - 5031628
Alignment:
| Q |
11 |
tatagtattaaggatcgcaattggaccacagttttgatttagaactttggtcacacatgtcttattaaaaggctaaaacttgttttgatacattttatag |
110 |
Q |
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| T |
5032131 |
tatagtattaaggatcgcgaggcgaccacagttgtgatttagaactttggttacacatatc-----aaaaggctcaaacttgttttgatgcattttatag |
5032037 |
T |
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| Q |
111 |
ggatggaattcatttgtcacatgaggggagcaagatagtggtaaaagagatattgaaggtcctcgatgacgcggactggaacccaagtctacactggaaa |
210 |
Q |
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| T |
5032036 |
ggatggaatttatttgtcacatgaggggagcaagatagtggtaaaagagatactgaaggtcctcgaagacgg--------------------actggaaa |
5031957 |
T |
|
| Q |
211 |
tcaatgccaaatgagtttgcagaagattcaccatatgatccggttgctatagatgaaaagactacagtaaatggatccacctgcaacttccagaagaatt |
310 |
Q |
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| T |
5031956 |
tcaatgccaaatgagtttgcagaagattcaccatatgatccagttgctatagatgaaaagactaatgtaaatgtatccaactggaacttccagaaaaatt |
5031857 |
T |
|
| Q |
311 |
ttgaatgggaaaaagctttgtccatttccaaatcatcgaacggtcatcatcaatttgaagaatcagctgtcactaaccagcaaggtctataactgagatc |
410 |
Q |
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| T |
5031856 |
ttgaatgggaaaaagctttgtgcatttccaaatcatcgaatggtcatcatcaatttgaagaatcagctgtcacaaaccagcaaggtctatatctgagatc |
5031757 |
T |
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| Q |
411 |
aagaaaagtatttgaaatgactttgggaaaaagttaccaggtttatgaacacaagtgttg---------------tgttcaaaaaataagtactagaatt |
495 |
Q |
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| T |
5031756 |
aagaaaagtatttgaaatgactttgggaaaaagttatcaggtttatgagcacaagtgttgtgttttttattgttgtgttaagaaaataagtactagaatt |
5031657 |
T |
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| Q |
496 |
ttatttattatcaaaataatatgaagatc |
524 |
Q |
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| T |
5031656 |
gtatttattatcaaaataatatgaagatc |
5031628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 25084081 - 25083985
Alignment:
| Q |
153 |
aaaagagatattgaaggtcctcgatgacgcggactggaacccaagtctacactggaaatcaatgccaaatgagtttgcagaagattcaccatatgat |
249 |
Q |
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| T |
25084081 |
aaaagagatattgaatgtcatcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagattctccttatgat |
25083985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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