View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15534_low_6 (Length: 453)
Name: NF15534_low_6
Description: NF15534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15534_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 7917179 - 7917234
Alignment:
| Q |
26 |
agcaaaggtgcaaggttaaaaattgaggatattcaaattatgtataaactacgaaa |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7917179 |
agcaaaggtgcaaggttaaaaattgaggatattcaaattatgtataaactacgaaa |
7917234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 7919972 - 7920047
Alignment:
| Q |
267 |
tcaaattcaaaatacaaagcctgaacaagataatcatgttatttttaatccaacgatttgtattgatggttgcatgatt |
345 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||||||| ||||| | |||||| |||||||||||| |
|
|
| T |
7919972 |
tcaaattcaaaatacaaagtcataacaagataat---gttatttttaatcatacgatatatattgacggttgcatgatt |
7920047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 453
Target Start/End: Complemental strand, 7935102 - 7935059
Alignment:
| Q |
410 |
ctctcattccctccaagggtttccaatattgagaccaacaagcc |
453 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
7935102 |
ctctcattccctcaaagtgcttccaatattgagaccaacaagcc |
7935059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University