View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15535_high_12 (Length: 257)
Name: NF15535_high_12
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 10603456 - 10603661
Alignment:
| Q |
12 |
catcatcataggtggtgcatcatggaatcatacttaaaaaatgtttaaagttcaaacaacagctgacgtcgtctctcgattggagatgttaacggtcctc |
111 |
Q |
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| T |
10603456 |
catcttcataagtggtgcatcatggaatcgtacttaaaaaatgtttaaaattaaaacaacagctgacgtcgtctctcggttggagatgttaataatcctc |
10603555 |
T |
|
| Q |
112 |
ctcatttttacaattgtaataatgacttaactgatagtggtgtgatt-nnnnnnngtagaaaataaatatgccgctcatattgaaccaacatacataatg |
210 |
Q |
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| T |
10603556 |
ctcatttttacaattgaaatagtgacttaaccgatagtggtgtgattaaaaaaaagtagaaaataaatatgccgctcatattgaaccaacatagataatg |
10603655 |
T |
|
| Q |
211 |
agtttt |
216 |
Q |
| |
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|||||| |
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| T |
10603656 |
agtttt |
10603661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 135
Target Start/End: Complemental strand, 14063680 - 14063642
Alignment:
| Q |
97 |
atgttaacggtcctcctcatttttacaattgtaataatg |
135 |
Q |
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| T |
14063680 |
atgttaacgatcctcctcatttttacaattgaaataatg |
14063642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 16828359 - 16828405
Alignment:
| Q |
95 |
agatgttaacggtcctcctcatttttacaattgtaataatgacttaa |
141 |
Q |
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||||||||| ||||||| ||||||||||||||| |||||||| |||| |
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| T |
16828359 |
agatgttaatggtcctcgtcatttttacaattggaataatgaattaa |
16828405 |
T |
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