View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15535_high_15 (Length: 249)
Name: NF15535_high_15
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15535_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7962615 - 7962376
Alignment:
| Q |
1 |
aagtattttacattcatataaaatgtacagtaaaaagatttattaacgtggtttaacattatcgtatgctaaatttnnnnnnnttca--tattattgtat |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
7962615 |
aagtattttacattcatataaaatgtacagtaaaagaatttattaacgtagtttaacattatcgtatgctaaatttaaaaaaatttaaatattattgtat |
7962516 |
T |
|
| Q |
99 |
catatgcatttatattgcgcatgagcttcataaacaaatgtgtttaatgcaaatttagatgagcggtaagaatgataaatcataatcaactacatgatta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7962515 |
catatgcatttatattgcgcatgagcttcataaacaaacgtgtttaatgcaaatttggatgagcggtaagaatgataaatcataatcaactacatgatta |
7962416 |
T |
|
| Q |
199 |
aatttgctccagctcgcttgaaattcaattcacacttcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7962415 |
aatttgctccagctcgcttgaaattcaattcacacttcat |
7962376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University