View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15535_high_19 (Length: 202)

Name: NF15535_high_19
Description: NF15535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15535_high_19
NF15535_high_19
[»] chr7 (15 HSPs)
chr7 (32-187)||(45375389-45375544)
chr7 (91-146)||(47507578-47507633)
chr7 (111-177)||(8170019-8170084)
chr7 (117-177)||(42493702-42493762)
chr7 (91-147)||(27076213-27076269)
chr7 (91-147)||(27202032-27202088)
chr7 (114-177)||(2741164-2741226)
chr7 (80-177)||(11822478-11822574)
chr7 (123-177)||(2964049-2964102)
chr7 (97-131)||(38454969-38455003)
chr7 (127-177)||(48137787-48137836)
chr7 (121-178)||(5248093-5248149)
chr7 (86-147)||(32829089-32829150)
chr7 (99-172)||(38452148-38452219)
chr7 (84-128)||(3256729-3256773)
[»] chr1 (17 HSPs)
chr1 (90-177)||(34445636-34445722)
chr1 (86-173)||(45584502-45584588)
chr1 (92-172)||(5115664-5115742)
chr1 (91-177)||(40377010-40377095)
chr1 (80-171)||(44719138-44719228)
chr1 (91-173)||(31652591-31652671)
chr1 (91-177)||(7549811-7549896)
chr1 (118-172)||(25095604-25095657)
chr1 (85-146)||(5851498-5851558)
chr1 (117-177)||(4039655-4039714)
chr1 (91-147)||(31807862-31807918)
chr1 (117-177)||(36393478-36393537)
chr1 (91-138)||(25302040-25302087)
chr1 (87-137)||(39150546-39150596)
chr1 (93-138)||(37705847-37705892)
chr1 (99-128)||(46592442-46592471)
chr1 (117-177)||(31745460-31745519)
[»] chr2 (16 HSPs)
chr2 (94-177)||(2393093-2393174)
chr2 (94-177)||(4238378-4238459)
chr2 (118-177)||(8789851-8789909)
chr2 (91-177)||(8773726-8773811)
chr2 (91-177)||(18053070-18053155)
chr2 (118-177)||(433563-433621)
chr2 (118-177)||(44941134-44941192)
chr2 (89-169)||(34546329-34546408)
chr2 (86-147)||(2769328-2769388)
chr2 (92-145)||(20683081-20683134)
chr2 (91-177)||(2826009-2826094)
chr2 (118-172)||(33275951-33276004)
chr2 (116-177)||(3199541-3199601)
chr2 (91-147)||(3882584-3882640)
chr2 (117-177)||(8798429-8798489)
chr2 (91-175)||(11742160-11742242)
[»] chr5 (18 HSPs)
chr5 (85-177)||(8247029-8247120)
chr5 (81-172)||(8761886-8761975)
chr5 (90-147)||(25486919-25486976)
chr5 (89-161)||(31889581-31889652)
chr5 (93-172)||(10051700-10051778)
chr5 (99-177)||(19692699-19692777)
chr5 (85-172)||(34032148-34032234)
chr5 (91-177)||(28793303-28793388)
chr5 (118-171)||(22871915-22871967)
chr5 (88-145)||(31672376-31672433)
chr5 (97-128)||(231397-231428)
chr5 (91-173)||(27650865-27650946)
chr5 (119-173)||(35395184-35395237)
chr5 (124-177)||(1354401-1354453)
chr5 (91-136)||(23023601-23023646)
chr5 (86-147)||(29342299-29342360)
chr5 (92-160)||(4725913-4725980)
chr5 (93-177)||(14042433-14042516)
[»] chr4 (14 HSPs)
chr4 (86-177)||(20389988-20390078)
chr4 (84-162)||(24395265-24395341)
chr4 (99-177)||(25196112-25196189)
chr4 (85-177)||(44646578-44646669)
chr4 (92-171)||(41468053-41468131)
chr4 (117-177)||(27346292-27346351)
chr4 (86-177)||(33982388-33982478)
chr4 (87-177)||(49446646-49446736)
chr4 (118-172)||(40480228-40480281)
chr4 (84-177)||(6316859-6316951)
chr4 (90-177)||(9802669-9802754)
chr4 (94-169)||(48097923-48097997)
chr4 (91-147)||(23230318-23230374)
chr4 (99-147)||(39727635-39727683)
[»] chr3 (12 HSPs)
chr3 (94-177)||(1680511-1680593)
chr3 (91-172)||(34758897-34758977)
chr3 (85-177)||(38705003-38705094)
chr3 (94-172)||(54912056-54912133)
chr3 (112-177)||(38388701-38388765)
chr3 (86-161)||(30687148-30687222)
chr3 (91-177)||(779728-779812)
chr3 (117-177)||(18399212-18399272)
chr3 (91-177)||(27968168-27968250)
chr3 (91-137)||(3027077-3027123)
chr3 (113-161)||(4033021-4033068)
chr3 (99-147)||(48551016-48551064)
[»] chr8 (9 HSPs)
chr8 (117-172)||(45368781-45368835)
chr8 (89-147)||(7691325-7691383)
chr8 (91-177)||(22209374-22209459)
chr8 (90-147)||(30534985-30535042)
chr8 (117-177)||(7044384-7044443)
chr8 (119-177)||(31206306-31206363)
chr8 (119-172)||(5020110-5020162)
chr8 (91-147)||(20279637-20279693)
chr8 (91-147)||(21066264-21066320)
[»] scaffold0246 (1 HSPs)
scaffold0246 (118-172)||(18167-18220)
[»] chr6 (8 HSPs)
chr6 (93-173)||(31702797-31702874)
chr6 (117-177)||(12383071-12383130)
chr6 (119-173)||(12307821-12307874)
chr6 (91-137)||(13445823-13445869)
chr6 (117-173)||(6048327-6048382)
chr6 (99-147)||(7465454-7465501)
chr6 (117-177)||(16442074-16442133)
chr6 (117-161)||(22696005-22696048)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 45375544 - 45375389
Alignment:
Q  32 gggcgggagcatgttggtccatcgggtctattaataatcnnnnnnnccattaattttatgggtcttattaacgagtgtccccggagcactctttaaggat 131  Q
    |||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  45375544 gggcgggagcatgttggtccgtcgggtctattaataatctttttttccattaattttatgggtcttattaacgagtgcctccggggcactctttaaggat 45375445  T
Q  132 tctaaaagaagaaatttatgttataaaaaagttaaatattttgattacacataatt 187  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45375444 tctaaaagaagaaacttatgttataaaaaagttaaatattttgattacacataatt 45375389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 47507578 - 47507633
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaat 146  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  47507578 gggtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaat 47507633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 8170019 - 8170084
Alignment:
Q  111 cccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||| |||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||    
T  8170019 cccggaacactctttaaggattccaaaagaagaaa-ttattttataaaaaagtcaaatattttgatt 8170084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 42493702 - 42493762
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||| |||||||||||||  | | |||||||||| |||||||||||||    
T  42493702 gcactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgatt 42493762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 27076269 - 27076213
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||| |||||||||||||   |||||||||||||||||||||||  ||||||||    
T  27076269 gggtcttgttaacgagtgtccttagagcactctttaaggattctaaataaagaaatt 27076213  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 27202032 - 27202088
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||| |||||||||||||   |||||||||||||||||||||||  ||||||||    
T  27202032 gggtcttgttaacgagtgtccttagagcactctttaaggattctaaataaagaaatt 27202088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 2741164 - 2741226
Alignment:
Q  114 ggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||||| |||||||| ||| |||| |||| ||||| | |||||||||||||    
T  2741164 ggagcactctttaaggattttaaaagaa-aaaattattttattaaaaaatcaaatattttgatt 2741226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 11822574 - 11822478
Alignment:
Q  80 attaattttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaat-ttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||  |||||||||||||| |||||    | ||||||||||| ||| |||||||| |||  |||  ||||||||||||||||||||||||||    
T  11822574 attaatttta--ggtcttattaacgaatgtccataaaacactctttaagaattttaaaagaaaaaaaattaatttataaaaaagttaaatattttgatt 11822478  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 2964049 - 2964102
Alignment:
Q  123 tttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||| ||||||||||||||||| |||| |||||||||| ||||| |||||||||    
T  2964049 tttaaagattctaaaagaagaaa-ttattttataaaaaaattaaaaattttgatt 2964102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 38455003 - 38454969
Alignment:
Q  97 tattaacgagtgtccccggagcactctttaaggat 131  Q
    |||||||||||||||||||||||||||| ||||||    
T  38455003 tattaacgagtgtccccggagcactcttcaaggat 38454969  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 48137787 - 48137836
Alignment:
Q  127 aggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| ||||||||||||| || |||||||||||| |||||||||||||    
T  48137787 aggattccaaaagaagaaatt-attttataaaaaagtcaaatattttgatt 48137836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 5248093 - 5248149
Alignment:
Q  121 tctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatta 178  Q
    ||||||||||||  ||||||||||||| || |||||||||||| |||||||| |||||    
T  5248093 tctttaaggatttcaaaagaagaaatt-attttataaaaaagtcaaatatttcgatta 5248149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 32829089 - 32829150
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||||||||| ||||||||||| || || ||| |||||||| |||| ||||| |||||||    
T  32829089 tttatgggtcttgttaacgagtgttcctggggcattctttaagcattccaaaaggagaaatt 32829150  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 38452148 - 38452219
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    |||||||||| ||||| | || ||||||||||||  ||||||||||| |||| |||||||||||| ||||||||    
T  38452148 ttaacgagtgcccccgaa-cattctttaaggatttaaaaagaagaaa-ttattttataaaaaagtcaaatattt 38452219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 3256773 - 3256729
Alignment:
Q  84 attttatgggtcttattaacgagtgtccccggagcactctttaag 128  Q
    |||||||||||||||||||||||| ||||| | ||| ||||||||    
T  3256773 attttatgggtcttattaacgagtatcccctgcgcattctttaag 3256729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 177
Target Start/End: Original strand, 34445636 - 34445722
Alignment:
Q  90 tgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||| ||||    
T  34445636 tgggtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaat-ttataaaaaagtcaaatatttcgatt 34445722  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 45584502 - 45584588
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    |||| ||||||| ||||||| || |||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||    
T  45584502 tttaagggtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaa-ttattttataaaaaagttaaatatttt 45584588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 5115742 - 5115664
Alignment:
Q  92 ggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||||||||||||||  |||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  5115742 ggtcttattaacgagta-ccccgacgcactctttaaggattctaaaagaataaa-ttatgttataaaaaagttaaatattt 5115664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 40377010 - 40377095
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| |||||||||| |||  | ||||||||||||||||| ||||||||||| | || |||||||||||| |||||||||||||    
T  40377010 gggtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaa-taattttataaaaaagtcaaatattttgatt 40377095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 44719138 - 44719228
Alignment:
Q  80 attaattttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatt 171  Q
    ||||||||| | |||||| |||||||||||||||||  |||| ||||||||||| |||| || | | |||| ||||||||||||||||||||    
T  44719138 attaatttttttggtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatata-ttattttataaaaaagttaaatatt 44719228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 31652591 - 31652671
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    ||||||| |||||||||||| |||||| |||||||||||||| | ||| |||||| |||| |||||||||||| |||||||||    
T  31652591 gggtcttgttaacgagtgtctccggagaactctttaaggatt-tcaaaaaagaaa-ttattttataaaaaagtcaaatatttt 31652671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 7549811 - 7549896
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| ||||||||||||| |||  ||||||||||| |||  ||||||||||| | || |||||||||||| |||||||| ||||    
T  7549811 gggtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaa-taattttataaaaaagtcaaatatttcgatt 7549896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 25095604 - 25095657
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    |||||||||||||||||||||||||||| |||| | |||||||||| ||||||||    
T  25095604 cactctttaaggattctaaaagaagaaa-ttatttcataaaaaagtcaaatattt 25095657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 5851498 - 5851558
Alignment:
Q  85 ttttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaat 146  Q
    ||||| |||||||||||| ||||||||  |||||||||||||||||||  ||||||||||||    
T  5851498 ttttaagggtcttattaa-gagtgtccttggagcactctttaaggatttcaaaagaagaaat 5851558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 4039714 - 4039655
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||| ||||||| ||| |||| |||||||||||| |||||||| ||||    
T  4039714 gcactctttaaggattccaaaagaataaa-ttattttataaaaaagtcaaatatttcgatt 4039655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 31807918 - 31807862
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||| |||||||||| |||||||||||| |||||| ||||||||| ||| ||||    
T  31807918 gggtcttgttaacgagtgcccccggagcactatttaagcattctaaaataagtaatt 31807862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 36393478 - 36393537
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||  ||||||| ||||| ||||||||||||| | |||||||||||||    
T  36393478 gcactctttaaggatttcaaaagaaaaaatt-atgttataaaaaaatcaaatattttgatt 36393537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 25302040 - 25302087
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaa 138  Q
    ||||||| ||||||||||||||| || |||||||||||||||| ||||    
T  25302040 gggtcttgttaacgagtgtccccagaacactctttaaggattccaaaa 25302087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 39150546 - 39150596
Alignment:
Q  87 ttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaa 137  Q
    ||||||||||| |||||||||| |||||| |||||||||||| || |||||    
T  39150546 ttatgggtcttgttaacgagtgcccccggggcactctttaagcatcctaaa 39150596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 37705847 - 37705892
Alignment:
Q  93 gtcttattaacgagtgtccccggagcactctttaaggattctaaaa 138  Q
    ||||| |||||||||| ||||||||||||||||||| |||| ||||    
T  37705847 gtcttgttaacgagtgcccccggagcactctttaagcattcgaaaa 37705892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 128
Target Start/End: Original strand, 46592442 - 46592471
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaag 128  Q
    ||||||||||||||||||||||||||||||    
T  46592442 ttaacgagtgtccccggagcactctttaag 46592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 31745519 - 31745460
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  31745519 gcactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 31745460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 2393174 - 2393093
Alignment:
Q  94 tcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||| |||||||||| | |||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||||||||    
T  2393174 tcttgttaacgagtg-ctccggagcattctttaaggattctaaaagaagaaattaat-ttataaaaaagtcaaatattttgatt 2393093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 4238459 - 4238378
Alignment:
Q  94 tcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||||| ||| |||||||||||||||| ||||||||||| |||| |||||||||| | |||||||| ||||    
T  4238459 tcttattaacgagtgtcccggga-cactctttaaggattcaaaaagaagaaa-ttattttataaaaaaatcaaatatttcgatt 4238378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 8789851 - 8789909
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  8789851 cactctttaaagattctaaaagaagaaatt-attttataaaaaagttaaatattttgatt 8789909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 8773811 - 8773726
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| |||||||||   | ||| ||||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||    
T  8773811 gggtcttgttaacgagtactctcggggcactctttaaagattctaaaagaagaaa-ttattttataaaaaagtcaaatattttgatt 8773726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 18053155 - 18053070
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| ||||||||||| || ||  |||||||||||||||  ||||||||||| |||| |||||||||||| |||||||||||||    
T  18053155 gggtcttgttaacgagtgttcctgggacactctttaaggatttcaaaagaagaaa-ttattttataaaaaagtcaaatattttgatt 18053070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 433621 - 433563
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||    
T  433621 cactctttaaggattccaaaagaataaattaat-ttataaaaaagttaaatattttgatt 433563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 44941192 - 44941134
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||    
T  44941192 cactctttaaggattctaaaagaagaaa-gtatgttataaaaaagttaaagatttcgatt 44941134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 34546408 - 34546329
Alignment:
Q  89 atgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaata 169  Q
    ||||| ||| |||||||||| ||| |||||||||||| ||||||| ||| ||||||||| || |||||||||||| |||||    
T  34546408 atgggacttgttaacgagtgcccctggagcactctttgaggattccaaatgaagaaattaat-ttataaaaaagtcaaata 34546329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 2769388 - 2769328
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||||||||| |||||||||| |||||| |||||||||||| |||| ||||| |||||||    
T  2769388 tttatgggtcttgttaacgagtg-ccccggggcactctttaagcattcaaaaaggagaaatt 2769328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 20683134 - 20683081
Alignment:
Q  92 ggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaa 145  Q
    |||||| |||||||||| ||||||  |||||||||||||||| |||||||||||    
T  20683134 ggtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaa 20683081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 2826094 - 2826009
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| |||||||||||||| |  | |||||||||| || |||||| |||||| |||| || ||||||||| |||||||| ||||    
T  2826094 gggtcttgttaacgagtgtccctgtggtactctttaagcatactaaaataagaaa-ttattttttaaaaaagtaaaatatttcgatt 2826009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 33276004 - 33275951
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||||||||| ||||||||| |||||| |||| || ||||||||||||||||||    
T  33276004 cactctttaagcattctaaaacaagaaa-ttattttttaaaaaagttaaatattt 33275951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 3199601 - 3199541
Alignment:
Q  116 agcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||  ||||||||| |||||| |||| |||||||||| | |||||||||||||    
T  3199601 agcactctttaataattctaaaataagaaa-ttattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 3882584 - 3882640
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||| |||||||||| || ||| |||||||||||| ||||||||| ||| ||||    
T  3882584 gggtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaatt 3882640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 8798489 - 8798429
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||| | ||||||| |||||||| ||| |||| ||| | ||||||||||||||||||||    
T  8798489 gcactcatgaaggattttaaaagaaaaaaattattttacataaaagttaaatattttgatt 8798429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 175
Target Start/End: Complemental strand, 11742242 - 11742160
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttga 175  Q
    ||||||| ||||||||||||| |||  |||| |||||||||| ||||| |||||| ||||  ||||||||||| |||||| ||||    
T  11742242 gggtcttgttaacgagtgtcctcgggacact-tttaaggattttaaaaaaagaaa-ttattctataaaaaagtcaaatatattga 11742160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 8247029 - 8247120
Alignment:
Q  85 ttttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||| |||||||||| |||||   |||||||||||||||| ||||||||||| | || |||||||||||| |||||||| ||||    
T  8247029 ttttatgggtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaa-taattttataaaaaagtcaaatatttcgatt 8247120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 8761886 - 8761975
Alignment:
Q  81 ttaattttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    |||||||| ||| |||| |||| ||||||| ||||| ||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||    
T  8761886 ttaatttt-tggctcttgttaatgagtgtctccggatcactctttaaggattctaaaaaaagaaa-ttattctataaaaaagttaaatattt 8761975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 25486919 - 25486976
Alignment:
Q  90 tgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  25486919 tgggtcttgttaacgagtgtctccggagcgctcttaaaggattctaaaagaagaaatt 25486976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 31889581 - 31889652
Alignment:
Q  89 atgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaa 161  Q
    |||| |||| |||||||||| |||| ||| ||||||||| ||||||||||||||||||| || ||||||||||    
T  31889581 atggatctttttaacgagtgcccccagagtactctttaacgattctaaaagaagaaattaat-ttataaaaaa 31889652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 10051700 - 10051778
Alignment:
Q  93 gtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||| ||||||||||||||    |||||||||||||||| |||||||||||| | || |||||||||||| ||||||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaa-taattttataaaaaagtcaaatattt 10051778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 19692699 - 19692777
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttat-aaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||||| || |||| |||||||| |||||||| ||||    
T  19692699 ttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaat-ttataaaaaaagtcaaatatttcgatt 19692777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 34032234 - 34032148
Alignment:
Q  85 ttttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||| ||||||| |||||||||||||  || |||||||||||| ||||||||| ||| || ||||  | ||||||||||||||||||    
T  34032234 ttttaagggtcttgttaacgagtgtccttggggcactctttaagcattctaaaataagtaa-ttattctttaaaaaagttaaatattt 34032148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 28793303 - 28793388
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| ||||||||||   |||| || |||||||||||||| ||||||||||| | || |||||||||||| |||||||| ||||    
T  28793303 gggtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaa-tgattttataaaaaagtcaaatatttcgatt 28793388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 22871915 - 22871967
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatt 171  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||| |||||||    
T  22871915 cactctttaaggattctaaaagaagaaa-atattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 31672376 - 31672433
Alignment:
Q  88 tatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaa 145  Q
    |||||||||| |||||||||| |||||| |||||||||||| |||| ||||| |||||    
T  31672376 tatgggtcttgttaacgagtgcccccggggcactctttaagcattccaaaaggagaaa 31672433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 231428 - 231397
Alignment:
Q  97 tattaacgagtgtccccggagcactctttaag 128  Q
    ||||||||||||||||||||||||||||||||    
T  231428 tattaacgagtgtccccggagcactctttaag 231397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 27650946 - 27650865
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    ||||||| |||||||||  | ||||| ||||||||||  |||| |||| |||||||| ||  |||||||||||||||||||||    
T  27650946 gggtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaatt-attatataaaaaagttaaatatttt 27650865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 35395184 - 35395237
Alignment:
Q  119 actctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    ||||||||||||||| |||||||||||  ||| |||||||||||| |||||||||    
T  35395184 actctttaaggattccaaaagaagaaa-ctattttataaaaaagtcaaatatttt 35395237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 1354453 - 1354401
Alignment:
Q  124 ttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||| ||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  1354453 ttaagaattctaaaaaaagaaatt-attttataaaaaagttaaatatttcgatt 1354401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 23023601 - 23023646
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaa 136  Q
    ||||||| |||||||||| |||||| |||||||||||| |||||||    
T  23023601 gggtcttgttaacgagtgcccccggggcactctttaagcattctaa 23023646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 29342299 - 29342360
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||| ||||||| |||||||||| ||| ||| ||||||||||| |||| ||||| |||||||    
T  29342299 tttaagggtcttgttaacgagtgccccgggaacactctttaagcattccaaaaggagaaatt 29342360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 4725980 - 4725913
Alignment:
Q  92 ggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaa 160  Q
    |||||| |||||||||||||||| | |||| ||||||||||  ||||||| ||| |||| |||||||||    
T  4725980 ggtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaa-ttattttataaaaa 4725913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 177
Target Start/End: Original strand, 14042433 - 14042516
Alignment:
Q  93 gtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||| ||||||||||| ||||   ||||||||| |||||||||| || ||| ||||  | ||||||||| |||||||||||||    
T  14042433 gtcttactaacgagtgtctccgggatactctttaaagattctaaaataataaa-ttattatttaaaaaagtcaaatattttgatt 14042516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 20389988 - 20390078
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||||| ||||||||||| ||||| ||| |||||||| |||| |||| |||||| | || |||||||||||| |||||||||||||    
T  20389988 tttatgggtcttgttaacgagtgttcccggggcattctttaagaattccaaaacaagaaa-taattttataaaaaagtcaaatattttgatt 20390078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 24395341 - 24395265
Alignment:
Q  84 attttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaag 162  Q
    ||||||| | |||| |||||||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||    
T  24395341 attttatagatcttgttaacgagtgtcccggg-gcactctttaaggattctaaaagaagaaattaat-ttataaaaaag 24395265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 25196112 - 25196189
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||| | ||| | |||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||    
T  25196112 ttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaat-ttataaaaaagtcaaatattttgatt 25196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 44646669 - 44646578
Alignment:
Q  85 ttttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||| |||||||||| |||||| ||| ||||||||||||  |||||||||||  ||| |||||| ||||| |||||||| ||||    
T  44646669 ttttatgggtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaa-ctattttataataaagtcaaatatttcgatt 44646578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 41468053 - 41468131
Alignment:
Q  92 ggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatt 171  Q
    |||||| ||||||||| || | || | |||||||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  41468053 ggtcttgttaacgagtttctctggggtactctttaagaattccaaaagaagaaatt-atgttataaaaaagttaaatatt 41468131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 27346292 - 27346351
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||||| ||| |||||||||    
T  27346292 gcactctttaaggattctaaaaaaag-aatttattttataaaaaagtcaaagattttgatt 27346351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 33982388 - 33982478
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||||| | |||||||| | |||| | | ||||||||||||  ||||||| ||||| || ||||||||||||||||||||| ||||    
T  33982388 tttatgggtcttgtgaacgagtggctccggggtattctttaaggatttcaaaagaaaaaatt-attttataaaaaagttaaatatttcgatt 33982478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 49446736 - 49446646
Alignment:
Q  87 ttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttat-aaaaaagttaaatattttgatt 177  Q
    ||||||||||| ||||| |||| || ||| ||||||||||||||||| |||||||| || |||| |||| |||||||| |||||||| ||||    
T  49446736 ttatgggtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaag-aagttattttataaaaaaagtcaaatatttcgatt 49446646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 40480281 - 40480228
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  40480281 cactctttaaggatgctaaaagaagaaa-ttatgtcataaaaaagtcaaatattt 40480228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 6316951 - 6316859
Alignment:
Q  84 attttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||| ||||||| |||||||||| | |||| ||||||||||| ||||  ||||||||||| | || |||||||||||  ||| |||||||||    
T  6316951 attttaagggtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaa-taattttataaaaaaggcaaagattttgatt 6316859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 9802754 - 9802669
Alignment:
Q  90 tgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||| ||||||||| | ||||   ||||||||||  |||||||||||| ||||| || |||||||||||| |||||||||||||    
T  9802754 tgggtcttgttaacgagtattcccgagacactctttaaa-attctaaaagaaaaaatt-attttataaaaaagtcaaatattttgatt 9802669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 48097923 - 48097997
Alignment:
Q  94 tcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaata 169  Q
    |||| |||||||||||| |||||||||| |||||| ||||||||  |||||| ||||  | |||||||||||||||    
T  48097923 tcttgttaacgagtgtctccggagcactttttaagtattctaaattaagaaa-ttattctttaaaaaagttaaata 48097997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 23230374 - 23230318
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||||||||||||||||| |||   ||||||||||| |||| ||||| |||||||    
T  23230374 gggtcttattaacgagtgtctccgagacactctttaagcattccaaaaggagaaatt 23230318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 39727683 - 39727635
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||||||| || || |||| |||||||||||||||||||| |||||    
T  39727683 ttaacgagtgttcctggggcacactttaaggattctaaaagaataaatt 39727635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 1680593 - 1680511
Alignment:
Q  94 tcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||| |||||||||||  |||||||| ||||||||||||| ||||||| ||||| || |||||||||||| |||||||||||||    
T  1680593 tcttgttaacgagtgtttccggagcattctttaaggattcaaaaagaataaattaat-ttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 34758897 - 34758977
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||||| |||||||||| | |||| ||||||||||||||||| |||||||| || |||| |||||||||||| ||||||||    
T  34758897 gggtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaa-ttattttataaaaaagtgaaatattt 34758977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 38705094 - 38705003
Alignment:
Q  85 ttttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||| ||||||| |||||||||| ||||| || |||||||||| |||| ||||||| ||||| || ||||||||| || |||||||||||||    
T  38705094 ttttaagggtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaatt-attttataaaaatgtcaaatattttgatt 38705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 54912133 - 54912056
Alignment:
Q  94 tcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    |||| |||||||||||||||| ||||||||||||| |||| ||||||| |||  ||| |||||| ||||||||||||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaa-ctattttataacaaagttaaatattt 54912056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Original strand, 38388701 - 38388765
Alignment:
Q  112 ccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||| ||||| ||||| ||||||||||||||||||| || |||||||||||| |||||||||||||    
T  38388701 ccggggcactatttaaagattctaaaagaagaaattaat-ttataaaaaagtcaaatattttgatt 38388765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 30687222 - 30687148
Alignment:
Q  86 tttatgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaa 161  Q
    ||||||| |||| |||||||||||| | |    ||||||||||||||||||||||||||| |||||||||||||||    
T  30687222 tttatggatcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaa-ttatgttataaaaaa 30687148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 779812 - 779728
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| |||||||||| | || || ||||||||||  |||||||||||| ||||| || |||| |||||||||||||||||||||    
T  779812 gggtcttgttaacgagtgcctccaga-cactctttaaaaattctaaaagaataaatt-attttatgaaaaagttaaatattttgatt 779728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 18399272 - 18399212
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||| ||||||||||||   | |||||||||||| |||||||| ||||    
T  18399272 gcactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatt 18399212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 27968168 - 27968250
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||  ||  |||||||||||| ||| |||||||||    
T  27968168 gggtcttgttaacgagtg-ccccgga-cactttttaaggattccaaaagaagaaa--taatttataaaaaagtcaaagattttgatt 27968250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 3027123 - 3027077
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaa 137  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||    
T  3027123 gggtcttgttaacgagtgcctccggagcactctttaagcattctaaa 3027077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 4033021 - 4033068
Alignment:
Q  113 cggagcactctttaaggattctaaaagaagaaatttatgttataaaaaa 161  Q
    ||||||||| |||||||||||||||| |||||| |||| ||||||||||    
T  4033021 cggagcactttttaaggattctaaaaaaagaaa-ttattttataaaaaa 4033068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 48551016 - 48551064
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||||||||||| |||||||||||||| || |||||  ||||||||    
T  48551016 ttaacgagtgtccccagagcactctttaagcatgctaaattaagaaatt 48551064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 45368835 - 45368781
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||    
T  45368835 gcactctttaaggattccaaaaaaagaaa-ttattttataaaaaagttaaatattt 45368781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 7691325 - 7691383
Alignment:
Q  89 atgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||| || |||||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  7691325 atgggttttgttaacgagtgtctcgggagcactctttaagcattttaaaagaagaaatt 7691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 22209374 - 22209459
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||| |||||| ||||  ||||||||||| ||| ||||||||| || ||||    |||||||||||||||||||||||    
T  22209374 gggtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaa-ttattccttaaaaaagttaaatattttgatt 22209459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 30534985 - 30535042
Alignment:
Q  90 tgggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||||| |||||||||||| | |||| |||||||||| |||||||||| |||||||    
T  30534985 tgggtcttgttaacgagtgtctctggagtactctttaagcattctaaaaggagaaatt 30535042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 7044443 - 7044384
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||| ||| |||| ||||    
T  7044443 gcactctttaaggattctaaaagaagaaattaat-ttattaaaaagtcaaacatttcgatt 7044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 31206306 - 31206363
Alignment:
Q  119 actctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||||||| ||||| ||||| |||| |||||||||| | |||||||||||||    
T  31206306 actctttaaggattcaaaaagtagaaa-ttattttataaaaaaatcaaatattttgatt 31206363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5020162 - 5020110
Alignment:
Q  119 actctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    ||||||||||||||||||||||||||| | || |||||||||||| ||| ||||    
T  5020162 actctttaaggattctaaaagaagaaa-taattttataaaaaagtcaaagattt 5020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 20279693 - 20279637
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||| ||||| |||| |||||| |||||||||||| ||||||||| ||| ||||    
T  20279693 gggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaatt 20279637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 21066320 - 21066264
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    ||||||| ||||| |||| |||||| |||||||||||| ||||||||| ||| ||||    
T  21066320 gggtcttgttaacaagtgcccccggggcactctttaagcattctaaaataagcaatt 21066264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 18220 - 18167
Alignment:
Q  118 cactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattt 172  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||| ||||||||    
T  18220 cactctttaaggatgctaaaagaagaaa-ttatgtcataaaaaagtcaaatattt 18167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 31702874 - 31702797
Alignment:
Q  93 gtcttattaacgagtgtccccggagcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    ||||| |||||||||||||  || |||||||||||| |||  ||||||||||| |||| ||||||||||||||| ||||||    
T  31702874 gtcttgttaacgagtgtcc--ggggcactctttaagaatttcaaaagaagaaa-ttattttataaaaaagttaagtatttt 31702797  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 12383130 - 12383071
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    |||||||||||| |||  ||||| ||||||| || ||||||||||||||||||||||||||    
T  12383130 gcactctttaagaatttcaaaaggagaaatt-attttataaaaaagttaaatattttgatt 12383071  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 12307821 - 12307874
Alignment:
Q  119 actctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    ||||||||||||||  ||||||||||| |||| |||||||||||| |||||||||    
T  12307821 actctttaaggatttcaaaagaagaaa-ttattttataaaaaagtcaaatatttt 12307874  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 13445869 - 13445823
Alignment:
Q  91 gggtcttattaacgagtgtccccggagcactctttaaggattctaaa 137  Q
    ||||||| ||||||||||||||||| |||||||||||| || |||||    
T  13445869 gggtcttgttaacgagtgtccccggtgcactctttaagcatgctaaa 13445823  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 6048382 - 6048327
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatatttt 173  Q
    |||||||||||  |||||||||||||||||| || |||||||||||| ||| |||||    
T  6048382 gcactctttaaaaattctaaaagaagaaattaat-ttataaaaaagtgaaacatttt 6048327  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 7465454 - 7465501
Alignment:
Q  99 ttaacgagtgtccccggagcactctttaaggattctaaaagaagaaatt 147  Q
    |||||||||| |||||| ||||| |||||||||||| ||||||||||||    
T  7465454 ttaacgagtgcccccgg-gcactttttaaggattcttaaagaagaaatt 7465501  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 16442074 - 16442133
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaagttaaatattttgatt 177  Q
    ||||||||||| ||||||||||||| ||| |||  |||||||||||| ||| |||||||||    
T  16442074 gcactctttaaagattctaaaagaataaa-ttagtttataaaaaagtcaaacattttgatt 16442133  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 22696048 - 22696005
Alignment:
Q  117 gcactctttaaggattctaaaagaagaaatttatgttataaaaaa 161  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||    
T  22696048 gcactctttaaggattccaaaagaagaaa-ttattttataaaaaa 22696005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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